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ET13262

CSHL Arabidopsis genetrap mutant lines

Original: ET13262

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13262

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18295229 [Map]; Strand: c
      • AT4G39345.1 - [+] show detail - pre-tRNA
        Distance: 1378; Region: intergenic
      • AT4G39350.1 - [+] show detail - cellulose synthase A2
        Distance: -1568; Region: intergenic
    Flanking Genome Sequence: ET13262 - 5-prime edge 
    GAAAATAGAA ATGTAATTAT ACAATTGGTT TAGTCTTTTA AAACTACGAT 
    ACAAAAATCT GAAATATTTT GAACACTTTT TACTTGAAAC TAGATTGTTG 
    TATTCATGGG AGTACAAATA TTCGTCGGTC GATATATGGG CCATTATTTG 
    TTCAAAAATC AAAAGCTTTT GATGGCCTAC AAGGCTCCAC CAACAAATCT 
    GGAAATTTAT ACAATCCATA ATTAATTAAT AGCACAAACA TATAATATCG 
    GCACCGACGG AAAATTACCA CTGTGAAGAA TAGCCAAAAA GATAAGATGA 
    AGCATGTGTT TTAAAATGTT TTCACTGTAT TGCAGTATTT TGAAACTGGC 
    GACTAAAATA GACAGGCATT GTTGTTAGGA TCGAATTATT GTGCTATCCA 
    CAAGAAAAAG TTAGTACTAA TTTATTGTTA AACTTTTCCC AATATATTCT 
    AATTTATTGT TAGAATCGAA TTATTGGGCT ATCCAGAGGA GTATTTAATA 
    TTCGCTCTTC GGGATTACAT TTAAATAAGC CAAATCTTGT GTATATTATT 
    ATGATAGGTC AATGACTGG

AT4G39345.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-His (anticodon: GTG)
Link
InterPro Scan - TAIR

AT4G39350.1

Model type
Protein coding
Short Description
cellulose synthase A2
Curator Summary
Encodes a cellulose synthase isomer, related to CESA6. As inferred from the null role of secondary wall-type CesAs, included in a set of five primary wall-type CesAs that may support trichome cell wall thickening.
Computational Description
cellulose synthase A2 (CESA2); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: primary cell wall biogenesis, cellulose biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: cellulose synthase A9 (TAIR:AT2G21770.1); Has 3166 Blast hits to 2799 proteins in 618 species: Archae - 10; Bacteria - 1096; Metazoa - 3; Fungi - 18; Plants - 1940; Viruses - 5; Other Eukaryotes - 94 (source: NCBI BLink).
Link
InterPro Scan - TAIR