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ET13265

CSHL Arabidopsis genetrap mutant lines

Original: ET13265

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET13265

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2981227 [Map]; Strand: c
      • AT5G09610.1 - [+] show detail - pumilio 21
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13265 - 5-prime edge 
    CTACTTTATC CCTGCCCTGA TCCAACTTGA GTCTGATTAT CGGCTGCAGT 
    TGAGAACACC TTCAAGAGAA TGAAACGAGA CAATCAACAT TTTAGTAAAA 
    ACTTGACAAA AACAATGGTA GCTTTGGATG GCTCATAAAT TAGTATATAT 
    CACAGGAATG TGCTTTCATG ACCCCTGTTA AAGAAGAACC AGAGAGATCT 
    CGAGCGTACA AAGAGAATCG AAGAGATTGT GATTGCAAAA GTGTTACTTA 
    TATAGAGAAG AGGAGATTCT GTGTTCGTAG TTGGAATAGG AATCGCAGGA 
    GTTATAGAGA TAAGAGCTCC GGTCCCAAGT CATTTTCGAT TTGGAGGACT 
    CGCATAGAGT TTTAAATTTT TTAATTTTTT TAACAAACGC AAAAATTAGC 
    CTGATTAAAG TTATTGATAG AAATTGCATT AAAAATTAAA ACATCATCAC 
    TGCAAATAAA ACAATATTTT AACTCATCTT TTCCTGAAAT TGAAGTTGAC 
    AAATTTCATG AAGAAAACTT GTAGCAAAAA GAGTAACGTA GCAACAGAAC 
    TTTGGTAAAC ATTTA

AT5G09610.1

Model type
Protein coding
Short Description
pumilio 21
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 21 (PUM21); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 16 (TAIR:AT5G59280.1); Has 4825 Blast hits to 2764 proteins in 231 species: Archae - 2; Bacteria - 5; Metazoa - 477; Fungi - 433; Plants - 446; Viruses - 4; Other Eukaryotes - 3458 (source: NCBI BLink).
Link
InterPro Scan - TAIR