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ET13267

CSHL Arabidopsis genetrap mutant lines

Original: ET13267

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13267

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22120541 [Map]; Strand: w
      • AT5G54490.1 - [+] show detail - pinoid-binding protein 1
        Distance: -863; Region: promoter
    Flanking Genome Sequence: ET13267 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CTCGAAAAAC 
    ATTGAATCTT GATTTATTGA CTTGGTCATT CATCGATTTT AATTAAGTAT 
    ATCTCTACCT AGATCAAGAT CTTTCGGGAC CGATTGAACA TATATTTAAA 
    AAATTCAAAA TGTTTCGAAC ACTTAATTTA GATTATTGTC ATATACAAAA 
    AAAAAAAAGG GTCCTGGTCA ATAACCGGAA ATTTTTAGCC AATGGCAGCC 
    ATGGAACCTT AACCGGTCAA AGGAAAAGCC CTAAAATCCG AAAATCCCCC 
    CAAAAAAAGA AAAAATTTCC CAAAACTTCA AAACCAAATT GGTGAATTTA 
    AAATTTCCCA AACCCGGGGA AATTCCTTTT TTAATTTCCC AAAAATTTTT 
    TTTTTTTTAG AATGAACCAA TCCTAAAATT TTTGGGGGAA ACATTAAAAA 
    GGTCCGAATT GGCTTAAAAT TAAAAAAAAA AAAATCCCCC CAAACCCCAA 
    AAAAAGGAAC CATAACCCCT TGGAAAACCC TCAAATACGG GGCCTTTAAA 
    CCCCCTAACA AACCCCCAAG GTTTTCCGGT TCCTGGGGCA AAACCCCCCC 
    CAAAAAAAAA AACCCCGGGT CAACCATTTT CCAAGGCGGA ATAAAAACCC 
    CCGTTCCCCA AAAC

AT5G54490.1

Model type
Protein coding
Short Description
pinoid-binding protein 1
Curator Summary
Encodes a PINOID (PID)-binding protein containing putative EF-hand calcium-binding motifs. The interaction is dependent on the presence of calcium. mRNA expression is up-regulated by auxin. Not a phosphorylation target of PID, likely acts upstream of PID to regulate the activity of this protein in response to changes in calcium levels.
Computational Description
pinoid-binding protein 1 (PBP1); CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT4G27280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR