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ET13271

CSHL Arabidopsis genetrap mutant lines

Original: ET13271

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13271

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1443388 [Map]; Strand: w
      • AT4G03290.1 - [+] show detail - EF hand calcium-binding protein family
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: ET13271 - 3-prime edge 
    AATGAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TAGAAGTAGT CTATGATCAT ATATTTTCCA TTTAGACCGC AAGAGAAAAT 
    GGTTAAGCAA ATAACCAAAA TTAAAAACAA GAGAAGGTAA AAAAAAAAGA 
    AGAAAAAAAG GTTTTTTTCA ACTCAAAAAG TTAAAAAACC GACCCTTTTT 
    CATCATTGGT CTAAACTCCA GGAAATTAAC CCTACCATCA CCTTCAACAT 
    CCACTGGCAT TATCATCTTC CTACATTCCT CCAAGGTCTT ACCTTGTTTG 
    AGTCCCAGGG AAAATAAAAC CGCCTTCAAT TCATCCCCCG TTATAAACCC 
    ATCTCCGTTC CGATCAAATA CGTTGAACGC TTCCT

AT4G03290.1

Model type
Protein coding
Short Description
EF hand calcium-binding protein family
Computational Description
EF hand calcium-binding protein family; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT1G05990.1); Has 24510 Blast hits to 17278 proteins in 1569 species: Archae - 2; Bacteria - 188; Metazoa - 10458; Fungi - 4683; Plants - 5334; Viruses - 0; Other Eukaryotes - 3845 (source: NCBI BLink).
Link
InterPro Scan - TAIR