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ET13275

CSHL Arabidopsis genetrap mutant lines

Original: ET13275

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13275

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22395083 [Map]; Strand: w
      • AT3G60580.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: 39; Region: intergenic
      • AT3G60590.3 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -3145; Region: intergenic
    Flanking Genome Sequence: ET13275 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTTAGGC 
    CAACACGACG TGAGGCCAAT ACGAAAAAAA GAATCGGCGT TAGAACATGT 
    AAAAGTAGCC TCCTTTGCAT TTAAAATAAA ACATTATCTT TCTTTTTTTT 
    GTCTAGCTCG ACCCCAAAAA TAATAATAGT AAAAGAAGAA AAAAAAAGGT 
    TTCAACTTTT CCAAAATTTG GGAGGACCCA AATCCCGAAA GGCTGGTACC 
    TTTATTTCGG ATTTCTTGGA AACCCCCCGA AAATTCGGCT TTTTCGGGTG 
    GGGGCGGGAA AATAAAAATT TTTCTCCCTT GGTTCCCCAA ATTGGTTTCA 
    AGGAACTCAA GGTGGTGGAT CCCCGAAAAA ATCCCCACCC CGGGGGAACC 
    TTTGGGGACC CCAAGGGGTT GGCCCGGAGG GAAAAACTTT AAAACAAATG 
    GGACTTTCTG GGATTTTTTT GGCACCACCA CCACCTTAAC CAAACCCGGT 
    TCCGCTCCGG GGCCCGGTTT GGTGGTAACT AACCCGGTCC TCCTAAGGAC 
    TGGCTCAAGG CCCCCCAAAG GTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19432327 [Map]; Strand: w
      • AT2G47330.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -607; Region: promoter
      • AT2G47340.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13275 - 5-prime edge 
    ATCCTACTTT CTCCCTGATC CCAGTCCCTG CTTCCTCACC TGACCCTTCG 
    CTCATCGAAC CACCCGTATC ATCAATCTCG GTCGTCCCAG CCTCCGCACC 
    ATCCCCCACC TCTGAAGACA TTAACACCGG ATCTAATTTA GCTCCCACGG 
    CGGCAGTCTA CGCACCCGGA CCATCCCAAG AAGACATAGA CATCAACTTC 
    GACTCTGTCA CAAACATAGC TGATCTAGCT CCTAAATTTG AACATATAAA 
    CAAATTCGAT TTCTCGGCAA TGAAAATCGA CACGACGGCG AAAGATCTCT 
    GCAAAAACAC AGACTACAAC AACGAATGCA TCGCCGCGAT TCTCCCGGAT 
    CTACAGAAAC AAGCAGAAGG AGAAGGAGGA GACGGAGGAA TTGCTCCTAA 
    GGATGTGATG CGAATGGAAG CTGAATCTCT GTTAAAAAAA GCGAACGCGA 
    CTTTGGATTA CGCGAAACGT GTGGTGGAAG ATAGCAAAAC GCCGATGCCG 
    GTGAAAGAGG CGATGAGTGT TTGCGTCGAG AATTACGATT CGTTGATCTC 
    AGGTCTTGAA GATGCGAAGA TGGCCATGGA GGAGGGAGAT TACGGGAGAT 
    TGGATTCGGT ATTGAGCGCA GCCATCTCCG ATGTGTCGAC TTGATCTGAT 
    AATTACGTGG ATATTCCTGA TGGTGATTCG CCCGACGGCG TCTCTTGATG 
    ATCTTATGAA GA

AT2G47330.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G20920.1); Has 46798 Blast hits to 46047 proteins in 3085 species: Archae - 817; Bacteria - 24489; Metazoa - 6167; Fungi - 4661; Plants - 2616; Viruses - 11; Other Eukaryotes - 8037 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47340.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily protein
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G02550.1); Has 153 Blast hits to 151 proteins in 20 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 4; Plants - 145; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60580.1

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Computational Description
C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G45120.1); Has 2639 Blast hits to 2349 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 1624; Fungi - 13; Plants - 935; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60590.3

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR