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ET13292

CSHL Arabidopsis genetrap mutant lines

Original: ET13292

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13292

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 108555 [Map]; Strand: c
      • AT4G00240.1 - [+] show detail - phospholipase D beta 2
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: ET13292 - 5-prime edge 
    CCTACTTTCT CCCTGACTTG CTAGTTTCTT TTGTTCTGAA TGGGAAAGCC 
    TTGACTTGGA TTACTAAAAT GTAATTAAGG GTAACGTGTC CGGTTGTCCA 
    AGAGAACCTT GGCATGACTT GCACAGTAAG ATTGATGGCC CAGCTGCGTA 
    TGATGTGCTG ACAAATTTTG AGGAGAGGTG GCTGAAGGCT GCTAAGCCTC 
    ACAGAATCAA TAAATTGAAG ACGTCATATG ATGATGCACT ACTAAGGATC 
    GACAGGATTC CAGATATATT AAGAGTTTTG GATGCTCCTA CTGTTAGTGC 
    AAACGACCCC GAGGCTTGGC ATGTTCAGGT AAGCACCATT GTATTAAAGT 
    TTGGTTCTGA TTAATTCACA AAGTCCATGG AAAGATGCCC ATCTCTCAGT 
    TGAACCATGC AAATTTTATA CTTTGGTCCA CAAATATTGT CCCAAATTTC 
    TGAAGCTAAT AATTGTCTGG TTTTGTAAAT CAGATTTTCC GGTCAATCGA 
    TTCAAACTCT GTGAAAGGTT TTCCAAAGGA TCCAAAATAT GCTACAAGCA 
    AGGTGAGGTG AAAAAATCAA AGAAACTTTG TGCTGTCATT ATGATTTGGT 
    TGGCTTGGAA ATTGATGGAT AGAGGGATTT TGTTTGGACA GAATTTGGTG 
    TGCGGTAAGA ATGTGCTCAT TGACATGAGC ATACACACCG CATATGTAAA 
    GGCCATTCGT GCAGCTCA

AT4G00240.1

Model type
Protein coding
Short Description
phospholipase D beta 2
Curator Summary
member of C2-PLD subfamily
Computational Description
phospholipase D beta 2 (PLDBETA2); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phosphatidylcholine metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Phospholipase D (InterPro:IPR015679), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D, plant (InterPro:IPR011402), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase D/Transphosphatidylase (InterPro:IPR001736); BEST Arabidopsis thaliana protein match is: phospholipase D beta 1 (TAIR:AT2G42010.1); Has 2407 Blast hits to 1935 proteins in 427 species: Archae - 0; Bacteria - 522; Metazoa - 526; Fungi - 534; Plants - 642; Viruses - 3; Other Eukaryotes - 180 (source: NCBI BLink).
Link
InterPro Scan - TAIR