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ET13296

CSHL Arabidopsis genetrap mutant lines

Original: ET13296

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13296

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3338108 [Map]; Strand: c
      • AT1G10170.1 - [+] show detail - NF-X-like 1
        Distance: -617; Region: promoter
    Flanking Genome Sequence: ET13296 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAACTGAAA 
    GTGATAGACC GCCTTGCTCC CAAAGGAAAT AAAAGATAGA GAGAGAGAGT 
    CGCGTACGAC TTTTCTTTTT CACCGGCTTG TCTGAATTAT TTTATGCTTG 
    ACAAACCCTC AAGAACCGCC TCATCCCTAA TGGGCTAACA ATGGGCCTAT 
    ACTAATTGAC TTAAACCAAT CTAAACCAGT AATTTAATTT GCAGATGATT 
    TCGGTTAACT TTATATATAT TAACTTGAGA GTTTTGAGAG ACTTGACTAC 
    AGGATACAAA CTACAAAGAA AGTGGTCAAG ACTCAGAATC GGTGAAAGAT 
    GGACTCTCTA GGTCAGCCAT GCTTGCAGAG GCAAATGACT CGAACGAGTC 
    CACTGTGGAG AGTGAAGATG TATCTTCGGA ATCTGAGTCG TCATCCATCT 
    CAGGGAGGAC GATGTGATGA TCGTCTTCTT CTTCTTCTTC AACACTCATA 
    TTCTTCCGGT TCTGAAGCAT CCTCAGACCC CATGAGTAGC CTGTTGATAG 
    CTGACTTGGC GGCTTCTGTG AACCACTCTG TCTTCGGGAG TGAGCTGGTG 
    AAAGAGAATA ATACACTTTT TAGGTAATTC GTTATGTTGA GACCGAGTTG 
    GAAGAAAATT CAAAAAGAGT GTTGTTTCAA TTACCTTTGT GGGTTGATGC 
    CTCTTTCCGA GAATATGTTG ATGGCTCGAT TGATCACCAC TGATGCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3338044 [Map]; Strand: c
      • AT1G10170.1 - [+] show detail - NF-X-like 1
        Distance: -553; Region: promoter
    Flanking Genome Sequence: ET13296 - 5-prime edge 
    TTTCTGCCTG CTTTCGTCGC TATATATAAT CTTCCTCATC GCTCCATTTT 
    CTCCTACAGT CTCTTTCTCT CTCTCCCTGA GAAAACAAGG AGACTAATCG 
    GAATCTCCTG CGTATTTGAT TCTTCCGGCG ATTGTTTCCT TCTTTATACG 
    CTTTCGTATA TTCATCTCAC TCGACCAANN NNTTCCCCCT CTTTGGTTGT 
    GAGCTTCTAA TCATTTGTTT TATCGTTCTC TTTGATTCAG CAATATCGAA 
    GCCAAAATTT GTGTGTTGGT TGGGGTTGGT CACCAAAATT TCTTAGATAT 
    GATAAAATAG GGCACTTTGA TTTTACCCCC TTTTTTAGAT CCCAAAGAAG 
    GAGGAATAGT TTAGGCGTCT TGCTATCAAT TTTCGATTCG TTGGATTGGG 
    CTTTAGTTAA TTTCAACATC GTTGGAGCTG TGTAAGATTT TATTGTTACG 
    TAGATTGGTT TGCTCGTATT TCCGGGTGGG GGGAATTTAT CTGGGC

AT1G10170.1

Model type
Protein coding
Short Description
NF-X-like 1
Curator Summary
Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response.
Computational Description
NF-X-like 1 (NFXL1); FUNCTIONS IN: zinc ion binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NF-X1-type (InterPro:IPR000967), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (TAIR:AT5G05660.1); Has 6781 Blast hits to 3735 proteins in 261 species: Archae - 0; Bacteria - 123; Metazoa - 4814; Fungi - 547; Plants - 327; Viruses - 10; Other Eukaryotes - 960 (source: NCBI BLink).
Link
InterPro Scan - TAIR