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ET13310

CSHL Arabidopsis genetrap mutant lines

Original: ET13310

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13310

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6737623 [Map]; Strand: w
      • AT5G19920.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -250; Region: promoter
      • AT5G19930.2 - [+] show detail - Protein of unknown function DUF92, transmembrane
        Distance: 0; Region: intron5 (3UTR)
      • AT5G19930.1 - [+] show detail - Protein of unknown function DUF92, transmembrane
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: ET13310 - 5-prime edge 
    CCTACTTTCT CCCTTCGAGT AAGAGGTCTT TGACGGAAGC ACAGTGATAC 
    ATCTCTTAAA CAAAACAACA AATACATGTT CAGTTACATT GGTAGCTGTG 
    ATTATTGTAC TGAACATAAA AGAGACTGTG TTCTATGAAC TTTTTTTTTT 
    TTTTTTTGAA AAAAGTTTTT TAAAAAAAAA AAACCTTTTT TTTCCCCCCC 
    CAAAAAAGGG AAATTTTAAA AAAAAAAACC CAGGGTTTTT TTTTCCCCAA 
    ATTTGGGGCG GAAAGGGGGA AAATTTAAAA ACCTTTTTTA AAAAAAAAGG 
    GGGGGGGCCT CTCCCTTTTA AAAAATTCCC CCCAAACCCG GGGGGCCCAA 
    AAAAAATTCC CAAGGGGGGG GAAAAAATTC CCCCCCCTTT TGGGAAAAAA 
    AGCCCCCCCC CAAAAATTTT TTTGGGGGGG GGCCGGGTTT TCCCCAACCC 
    CGGCCCCCGC AAAAAATTGG GAAAACCTTT TTTTCCCCCG GCCCCAAAAG 
    GGTTTTCCCC GGGGGGTTTT TAAAAAAATT CCCCTGGGCC GGGAAAGAAA 
    AAACCCCCGG AAAAAGGGGG GGCCCCCCCA AAAAAAAAAA AAA

AT5G19920.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G50970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G19930.1

Model type
Protein coding
Short Description
Protein of unknown function DUF92, transmembrane
Computational Description
Protein of unknown function DUF92, transmembrane; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G19930.2

Model type
Protein coding
Short Description
Protein of unknown function DUF92, transmembrane
Computational Description
Protein of unknown function DUF92, transmembrane; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794).
Link
InterPro Scan - TAIR