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ET13326

CSHL Arabidopsis genetrap mutant lines

Original: ET13326

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13326

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7102206 [Map]; Strand: w
      • AT1G20500.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13326 - 5-prime edge 
    TCGTCTCGTT TCAAATTATC CGATATGAAT CTAGCCACGT GAGCTGTTAA 
    ATTCCGGTGA GACGAGATCT CTCCTTTGCT CGGTCCCGTG GTTCCCGACA 
    AGTAAAGCAT CATCTCCGTG TCGTCCTGGT TGACTCGGTC CCTGACTCGT 
    TGCCCACTCG GTTCTTTCTT CACCATCTCG CTTAAAATCC CAACGACTCT 
    GATTGCGCTA GAGAGCTCCT GGTAAACTTC GTCGTCGGTG AGAACGACGG 
    AGATAGCGAC GGGGAGTTTT GGTGCCAGCT GGCGCGTAGT GAATACGAGA 
    GTTGGATTAC TGTCGGCAAT CTGTTTGGAG ATTTCACCGG AAGTATTGAG 
    AGTGTTTGCG GTGGTGAAAA CGGCGCCGAG AGACATGACG GAGAGGCAAA 
    CAACGGGAAT GTAGATGGAG TTTGGATAAA GGATGAGGAC GACGTCCCCT 
    CTTCGGATTC CGACTTCATG ATATAGACAG TCGGCGACGC GATCGAC

AT1G20500.1

Model type
Protein coding
Short Description
AMP-dependent synthetase and ligase family protein
Computational Description
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT5G38120.1); Has 82776 Blast hits to 75503 proteins in 3739 species: Archae - 1179; Bacteria - 53477; Metazoa - 3434; Fungi - 4583; Plants - 2754; Viruses - 1; Other Eukaryotes - 17348 (source: NCBI BLink).
Link
InterPro Scan - TAIR