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ET13341

CSHL Arabidopsis genetrap mutant lines

Original: ET13341

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13341

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16754273 [Map]; Strand: w
      • AT5G41835.1 - [+] show detail - transposable element gene
        Distance: 517; Region: intergenic
      • AT5G41840.1 - [+] show detail - F-box/RNI-like superfamily protein
        Distance: 163; Region: intergenic
    Flanking Genome Sequence: ET13341 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAATCTTT TGTTCATCTC 
    ACTCGACATA CATCTAAGAA AATTAGCACT CGTTGCACTA TCCTTTTGAA 
    CATGATCACA TTTTGCGTGA ACAAAAGTTT TAAATTAGCA CTCATCAGTT 
    TTTAAATTAA GTACAAAATC TAACCTAAAA GTAAATTTAA AAACTGATAT 
    GAGTATTACA AATATTCAAA ATAGATACAC GAGACTGAGA AAGTAAAGAC 
    GTAAAGATCA AAGAGGAATT TACAAGTTTT TCAAGCTTTT TAATTTTTTT 
    CATTTCTAAC AAGCAGAAAT CATCCATTTA ATCTAATGTT GCCCATATTA 
    ATGTGATGTG T

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16754341 [Map]; Strand: w
      • AT5G41835.1 - [+] show detail - transposable element gene
        Distance: 585; Region: intergenic
      • AT5G41840.1 - [+] show detail - F-box/RNI-like superfamily protein
        Distance: 95; Region: intergenic
    Flanking Genome Sequence: ET13341 - 5-prime edge 
    CTACTTTCTC CCTGCAAAAG ATAACCAACA TTCTCAGTGA AAAGGAAAAA 
    ATAAACATTA AACCAAGTCA GTAAAAGAAA GAACAGAAGG CAAAAGGCAG 
    AAACAAGAGA ATCTTGGATT GAGTTTAGCC TGAGACAATA TCCATGGCTG 
    ATAAACCACA AGAAGAATCT TCTAAAGAAG AGTACCTCGT TTAGTCGAAG 
    TAGATGACAA GCTGAGGTTC TTCGATGTTA TTTGGACATT GCAATTAGCT 
    GACGCTACTC GAGGAAGCTT CTCAAGTTTC TTGAACACTT TCATCACATC 
    TTCATCTTTT GGTGTATTGT AGTACAATAT CACTTGTTTA AGAACCGGCA 
    TTGTCTTTAG GAAGTGCTTG ACATGCTCTA TCTGCTCCTC TACGACACCA 
    CCAACTTCAT CACAAGACAC AGCATCTTCA TCATCATAGT CATCATGATC 
    AACATCAAGA CCATCCTCAT TCTCATCCTC AAAAGTTTCA CCAAACTTCA 
    ATATCTTTAG AACCTTCACC AGACTTGATG ATAAGCAAGT ACGGACATTC 
    TTCTCTCNNN TCTTCCGTCC CCCAATGATT CTCATATTTG CACAAGCAGC 
    CGTCCTTGTC CCCACATCTC TTTGTATACT TGTGATGCAG CCCCTGAAAC 
    ATAAAAGAAT CAGTTTCATA ATCAAACTAT TTGCTTAAAA CGTTTCAACA 
    ATTGCTCTAA AGGATGTGAA TAGTACCTCG AAGACCAATG TTTCTAGACT 
    TGGACAACTC TTG

AT5G41835.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.2e-43 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)
Link
InterPro Scan - TAIR

AT5G41840.1

Model type
Protein coding
Short Description
F-box/RNI-like superfamily protein
Computational Description
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G00320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR