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ET13356

CSHL Arabidopsis genetrap mutant lines

Original: ET13356

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13356

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26038348 [Map]; Strand: c
      • AT5G65166.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -1854; Region: intergenic
      • AT5G65170.1 - [+] show detail - VQ motif-containing protein
        Distance: -2826; Region: intergenic
    Flanking Genome Sequence: ET13356 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    ATTTCCTCTA ATCTCACATT ATCTTTATCA TGAATAATTC AATATCAAAA 
    ACTCATTCTA TAACGTAAAT GTACATTCAC GTGATCGTGT TCAAATAGCA 
    GTAATAAACT TGAACTAATT TTTCCTCAAT CTTTATGGCT AACAACGGAC 
    TGCTATAAAT TGATTTTATA AAAAAAAAAA AAAAAAAAAA AAAAAAATTT 
    CCCTTGGCTT AAAACCCTTT TTTTTTTTGG CCCCCCTCTT GGGGGGGGGG 
    TTAAAAACCT AAACCTTTCC CCCCTTTTGG GTTTTTTTCC CCCCCCCCTT 
    TTTTGTTTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26035898 [Map]; Strand: c
      • AT5G65165.1 - [+] show detail - succinate dehydrogenase 2-3
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13356 - 5-prime edge 
    TCCTACTTTC TCCACACTTC ACCAGCTTTT GATCAAGCGA ACAGAGAATG 
    TCGTCTGTCT TGCGGTTGTT GGGGCGGAGA ATCTGTAATC CAGCGGCGGA 
    GAAAGTGCGT TTGAGCAGTA GCCTAAGCGG TGGTGGAGAT TTTCCAATCT 
    TAAATGGACA TAAAGCGGCT CAAGACTTAT CCAAAGATAC TCTAAAATCC 
    CAAGACATAA CGAAAGAGAA AGAAGGTATG AATAAAGCTA AAATAAAATT 
    TGAATTAACT ACTTCTTTAA AGAAGCAGTT TTTTCAAATT ATATCCGCTG 
    ATTTTCAACA GGCCAACACA AAGAAGTTAA GAAGGAGTTC AAGATTTATA 
    GATGGAATCC TGACAAGCCT AACTCTAAAC CATTTCTTCA ATCTTTCTTC 
    GTTGATCTTT CCTCTTGTGG TCCCATGGTA ACTAACTAAA AATTGTTGAT 
    TATATTCCAT AGGATTGGTC TTAATCTGGT TGACTAACAT GTTCATGTGT 
    TCCGTTAGGT TTTGGACGTG CTGCAGAAGA TAAAAGCGGA GGATGATGCC 
    AGTTTGAGTT ACAGAAGATC ATGTAGAGAA GGGATATGTG GATCTTGTTC 
    AATGAACATT GACGGTACTA ACACTGTCGC ATGTCTTAAA CCCATAAACC 
    CAAA

AT5G65165.1

Model type
Protein coding
Short Description
succinate dehydrogenase 2-3
Curator Summary
One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Transcripts appear during seed maturation, persist through dessication, are abundant in dry seeds, and markedly decline during germination.
Computational Description
succinate dehydrogenase 2-3 (SDH2-3); CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Fumarate reductase, C-terminal (InterPro:IPR012285), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), Alpha-helical ferredoxin (InterPro:IPR009051), Succinate dehydrogenase/fumarate reductase iron-sulphur protein (InterPro:IPR004489); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 2-2 (TAIR:AT5G40650.1); Has 8948 Blast hits to 8944 proteins in 2136 species: Archae - 163; Bacteria - 5307; Metazoa - 268; Fungi - 171; Plants - 148; Viruses - 0; Other Eukaryotes - 2891 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65166.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65170.1

Model type
Protein coding
Short Description
VQ motif-containing protein
Computational Description
VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G35830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR