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ET13361

CSHL Arabidopsis genetrap mutant lines

Original: ET13361

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13361

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24057199 [Map]; Strand: c
      • AT1G64760.2 - [+] show detail - O-Glycosyl hydrolases family 17 protein
        Distance: -910; Region: promoter
      • AT1G64760.1 - [+] show detail - O-Glycosyl hydrolases family 17 protein
        Distance: -785; Region: promoter
      • AT1G64770.3 - [+] show detail - NDH-dependent cyclic electron flow 1
        Distance: 0; Region: exon1 (5UTR)
      • AT1G64770.1 - [+] show detail - NDH-dependent cyclic electron flow 1
        Distance: -240; Region: promoter
      • AT1G64770.2 - [+] show detail - NDH-dependent cyclic electron flow 1
        Distance: -240; Region: promoter
    Flanking Genome Sequence: ET13361 - 3-prime edge
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC GGACCATCCG 
    TTTTCTATAA GTAGTAAGAT GAATTTATTT TCTATTTTAA ATATTAGTTA
    TTCAGAAAAT TTGAAGACCA ATCAAAAACA AAAGATTAAA CAAAATCATG
    GTTACTTATT ATGTGGTGAT AACAATAACA TAAGGACGAC CCAACTCCCA
    AGACAACTTC TTATGATTAT AAAAAAAAAG AAAAAAAAAA TCTTATGATC
    AAAAAATGAT AATTTGATAA GCCCGTTTAT AATAAAGCTT GACAATTCTA
    ATTAACTTTC CTTGGGGGCT AAGTCCACTA CAAACTCCAT TTGCCTTATC
    TTTTCTTCCC CTTTCCCCCC ACCATTTGCC TTATCTTTCC CCCCCCTTAC
    TCCCCATCAA GGGCTTCCCT TATCCCTTTT TCTTTGCCCC CAAAACCAAA
    AGCCGTAAAA
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24057134 [Map]; Strand: c
      • AT1G64760.2 - [+] show detail - O-Glycosyl hydrolases family 17 protein
        Distance: -845; Region: promoter
      • AT1G64760.1 - [+] show detail - O-Glycosyl hydrolases family 17 protein
        Distance: -720; Region: promoter
      • AT1G64770.3 - [+] show detail - NDH-dependent cyclic electron flow 1
        Distance: 0; Region: exon1 (5UTR)
      • AT1G64770.1 - [+] show detail - NDH-dependent cyclic electron flow 1
        Distance: -305; Region: promoter
      • AT1G64770.2 - [+] show detail - NDH-dependent cyclic electron flow 1
        Distance: -305; Region: promoter
    Flanking Genome Sequence: ET13361 - 5-prime edge
    CCTACTTTAT CCCTGGTCCG GAGCCTCGAA TGCATTGCTT TATCATATTT 
    TACTATCATC GTTGAAATTG AAATAGAAGA CAATTTTTTT TTTTGAAATA
    AAAAACATTT GTTTTTTTCC TGGACAAAAT AAACCTTATT TTACCTAGGA
    AATTAGTTCC TATTGGTTTT TACAAAAAAA TTTACCATCC GTAAACACCC
    TTCCCATTTT TTTTCCAAAA TTTACCGGTA AAGGGGGCCG TAAGGGTTTT
    TCCCCAAGGT AAAAAGGTCC CCCCCTAACC CGAAGGGGAA ACAAAAGGGG
    GTCCAAACCA CCCCATAGGA GTTTAGTCCA GGTCCAGTTT TGGTATATAA
    GGGAAACCCC GATCCAAAGG GTTAAAAACC CTTAAAAAAA GGAAAGCCTA
    AGGTCCTACC AAAATCCGTT TTCCTAATAT AAAAACCCTT ACCCGATTAA
    CCCAAAATAG GACCGGATAA ATTTGGTTCC AATCCGGTTT GGGGTGGGGA
    CCAAACCTCC CCAGGGATTT AAACCCCAAA GGCCCCAAAT TTTTGAAAAT
    TTTAGGCCGG AAACCATAGG CCCCAGGAAC AAATTGGTTT ATAAGTGGTT
    CCAAGGACAA AAACGGAACG AGCTTTGGCC CATGACAGGT CCCCCCCGGA
    AAA

AT1G64760.1

Model type
Protein coding
Short Description
O-Glycosyl hydrolases family 17 protein
Computational Description
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT2G19440.1); Has 2673 Blast hits to 2603 proteins in 152 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 38; Plants - 2613; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G64760.2

Model type
Protein coding
Short Description
O-Glycosyl hydrolases family 17 protein
Computational Description
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT2G19440.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G64770.1

Model type
Protein coding
Short Description
NDH-dependent cyclic electron flow 1
Curator Summary
encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.
Computational Description
NDH-dependent cyclic electron flow 1 (NDF2); FUNCTIONS IN: carbohydrate binding, catalytic activity; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013); BEST Arabidopsis thaliana protein match is: NDH-dependent cyclic electron flow 5 (TAIR:AT1G55370.2); Has 82 Blast hits to 81 proteins in 22 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 5; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G64770.2

Model type
Protein coding
Short Description
NDH-dependent cyclic electron flow 1
Curator Summary
encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.
Computational Description
NDH-dependent cyclic electron flow 1 (NDF2); INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: NDH-dependent cyclic electron flow 5 (TAIR:AT1G55370.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G64770.3

Model type
Protein coding
Short Description
NDH-dependent cyclic electron flow 1
Curator Summary
encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.
Computational Description
NDH-dependent cyclic electron flow 1 (NDF2); BEST Arabidopsis thaliana protein match is: NDH-dependent cyclic electron flow 5 (TAIR:AT1G55370.2).
Link
InterPro Scan - TAIR