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ET13363

CSHL Arabidopsis genetrap mutant lines

Original: ET13363

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13363

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET13363 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    ACGCCTATGT GAGGAAATCT TGATGTTTGG CGGAGTTTAT TAAGGCTTCT 
    GCGTCTCGCA TCTAGGATGA TTGTGCATCA TATTTTTAAC TTTTTTTTTT 
    TTGAAATTTG GGACAATTTG GGAACCCCCA AAAGGGTTTT CTTTTTTTGG 
    GGGGAAAAGG GGTTTTTTGG GGCCCCTTTT ACCCGGGGGG CCCAGGGAAA 
    CGGGTAAACC TTAAATCCCC CCCGGGGGCC GTTTCCGGGA AAAAGCCCAT 
    TCCCCCCGGG GCCTGGGGGG GAAAAAAAAA ACCCCCCAAA ACCCCCCCTT 
    TTAAGGGCCC CTGGCGGGAA CCCCGAAACC CGGAAAAAAA AGGGGGTTTT 
    TCCCCCCAGC GGGGTTAAAG GGGAACCCCC CATTTTTTTC CCAAAAAACC 
    CCGGGGGGGA AACCCCCCGG CCCCCCAAAA GTTTCCCAAC CCCCCCGGGG 
    GCAAAAAACT TTTGGGGCCC CT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28044892 [Map]; Strand: w
      • AT1G74650.1 - [+] show detail - myb domain protein 31
        Distance: 1897; Region: intergenic
      • AT1G74660.1 - [+] show detail - mini zinc finger 1
        Distance: 2684; Region: intergenic
    Flanking Genome Sequence: ET13363 - 5-prime edge 
    CCTACTTTAT CCCTGATTCT AACCATGTAC TTTGAAAGTC AGGTGTGACC 
    TAAGAAGATA TATGAAAAAC GTAGATCTGT TTAATCGCTA CTACTTGATT 
    TTGATAAGAA ATGTCATCGC GCTTACCATA AAACATGAAC TAGAAGATTA 
    AGTTTGTCAA GTAATATCAA TTGAATGTTT GTATAAACGC CGACTAACTT 
    AGGTAAGAGT AAACCGAGTA TACACGATAC TGCATTGAAT TTGATATATC 
    TATGATATTA TGTATACATA TAGTTTGCGC ATGCTTTGAG AATTTTCTAA 
    GAATTGAATA GTTTTTCGAG AGAGGAAAAA GGAGAGAAAG AGAGTGTGAA 
    TAGAGGATTA AAAGGACAGA AGCATGTGAG ATTTGAAGGC GGGCCTTTGG 
    AAATCACATC GATCCCATGT ATCAAAAGGA AAGGAACTCT CATCTTCACT 
    TTCAATCATT TTCTCGAACC CATCTCTCCA TTGTTAGATA AGCCAAAGGT 
    TTCTTTTCGC TGTCTTGGTC CATGTGTTTT GTTC

AT1G74650.1

Model type
Protein coding
Short Description
myb domain protein 31
Curator Summary
Member of the R2R3 factor gene family.
Computational Description
myb domain protein 31 (MYB31); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 96 (TAIR:AT5G62470.2); Has 9009 Blast hits to 8400 proteins in 544 species: Archae - 0; Bacteria - 6; Metazoa - 828; Fungi - 478; Plants - 5790; Viruses - 3; Other Eukaryotes - 1904 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G74660.1

Model type
Protein coding
Short Description
mini zinc finger 1
Curator Summary
Constitutive overexpression of MIF1 caused dramatic developmental defects, seedlings were non-responsive to gibberellin (GA) for cell elongation, hypersensitive to the GA synthesis inhibitor paclobutrazol (PAC) and abscisic acid (ABA), and hyposensitive to auxin, brassinosteroid and cytokinin, but normally responsive to ethylene.
Computational Description
mini zinc finger 1 (MIF1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 7 processes; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: seedling growth, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456); BEST Arabidopsis thaliana protein match is: mini zinc finger (TAIR:AT1G18835.1); Has 423 Blast hits to 423 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 423; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR