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ET13367

CSHL Arabidopsis genetrap mutant lines

Original: ET13367

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13367

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3374659 [Map]; Strand: w
      • AT5G10690.1 - [+] show detail - pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing pro...
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: ET13367 - 3-prime edge
    GTAGAGGTTT TTACCGACCG TTACCGACCG TTTTCATCCC TAGATCAGGG 
    TGCTTCAAGG TGAGCGTGAA ATGGCAACAG ACAACAAGCT CTTGGGAGAA
    TTTGATCTAG TTGGCATTCC ACCATCTCCA AGAGGAGTCC CTCAGATCGA
    AGTGACATTT GACATTGATG CCAATGGCAT TGTCACTGTT TCCGCCAAGG
    ACAAGACGAC TGGTAAAGTA CAACAGATCA CAATCCGATC CTCTGAGTGT
    TGCGCCTTCC AAGACGAGCA CCATCAATTC CAAATGAGTT GCTACTGATA
    CAGATTTAGT TCTTTCAATA TATTCACTTT TGTCAGAAAG AAAATGAACA
    AGAAACAAAA CCTTGTTCCC TAACCTTGTT CTTCTTCGAG TTCTCTTGCA
    GCCTATGCTG TTGGAGATTC CTTCTTCCCT TGCACCCCTT CCTTCTTTGT
    TCCTTCCTCT GGTAATTCTT CTATTTGAGC CTTTGTTTCG GCTGTTTCTT
    CTTTCACTCT GCTGCTTTCG CTCTCTTCCT CTTTAACTTC TGCTTCTTCC
    TGTTCCTCTT GTTTACTTTT TTCGAAATTC ACAGCTTCTT CATATTCTGG
    GTAGTAGTAG CAACTGTCTC GCTATTTTCC TCATCATCAA CTTTCTTGCT
    ATCAAACTCC TCATAGATCT CAATCTTCTT GCTATCGACC AACACTTCTC
    GTCTCTTCTG CCTAAACCCG CGGAACAAAT CACTCGTCTC ATCCAAAACC
    GAAACATACT CAGGCTGGTG GCTCTCAAAC TTATACTCCT CAATGATCTT
    CAACTCTTTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 224117 [Map]; Strand: w
      • AT2G01490.1 - [+] show detail - phytanoyl-CoA dioxygenase (PhyH) family protein
        Distance: 699; Region: intergenic
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 39; Region: intergenic
    Flanking Genome Sequence: ET13367 - 5-prime edge
    CTTTATCCCT GAATGTCAGC ATCGAATGTC TCTCTCAGAG AGTCGCATAT 
    AGTATTGCGG TGGAACAAGA AAAGAAAGAA GAAAGCATGT GAACAAGTAG
    AAAAACATCG ATTACTAACA AACATCTAAT TAAGATATAT TCCTTACATT
    GACAAGGAAC CATCGAAGCT TTCAGTTTCA CTTTCAGACA TATGTATAGA
    TAGTTGCAAC TCCAAACCCA AGCCCCAACA TGGTCCACCT TCTCATTTGG
    GTAATAACTA ACAATAATAA TCTTCAAACG CTCCTATATA ACATTTACTA
    CACGTCTCCA TCTTCAAACG CTTCTCTTCT ATTATAAGAA CACATCACTT
    ACCATTCGTG GACAAAACAA CAAATAAAAC CTTCATTAAA GTCCTATTTA
    TTATTCACAC ATGGGTTTTT TGTTTCAGTT CTTCAGAGGC ATGAACTCGT
    AGTAGTAACA GTAGTTGCAT GCTTTCGTCT TCTCTATCAA CCGGCCTGTT
    TTCTCTTGGT ACTCCCTAAC CGGAAAGAGA TTTAAAGTCC GGTTGTCCCT
    CGTTTCT

AT2G01490.1

Model type
Protein coding
Short Description
phytanoyl-CoA dioxygenase (PhyH) family protein
Computational Description
phytanoyl-CoA dioxygenase (PhyH) family protein; FUNCTIONS IN: phytanoyl-CoA dioxygenase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phytanoyl-CoA dioxygenase (InterPro:IPR008775); Has 2926 Blast hits to 2921 proteins in 334 species: Archae - 4; Bacteria - 485; Metazoa - 347; Fungi - 101; Plants - 64; Viruses - 0; Other Eukaryotes - 1925 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01500.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.
Computational Description
PRETTY FEW SEEDS 2 (PFS2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: primary endosperm nucleus, nucleus; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 1 (TAIR:AT3G18010.1); Has 564 Blast hits to 564 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10690.1

Model type
Protein coding
Short Description
pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein
Computational Description
pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G12775.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR