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Mutant Lines
ET13376

ET13376

CSHL Arabidopsis genetrap mutant lines

Original: ET13376

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13376

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 3; Position: 18586941 [Map]; Strand: w
- AT3G50120.1 - [+] show detail - Plant protein of unknown function (DUF247)
  Distance: 0; Region: exon1 (CDS)

TAGAGTATTT TACCGACCGT TACCGACCGT CTTCATCTCT CTCGACATGT 
AAGCTCTGTA TCTACAGAGT TCCATATTAC CTTCAAGAAA ACGACAACAA 
ATCGTATTTC CCTCAGACAG TCTCGCTTGG TCCGTACCAT CATGGTAAGA 
AACGGCTCCG GTCTATGGAC CGTCACAAAT GGCGTGCTGT CAATAGAGTC 
TTGAAACGTA CGAACCAAGG CATTAAAATG TATATCGACG CCATGAGAGA 
GCTAGAGGAA AAGGCTCGAG CTTGTTACGA AGGTCCCTTA AGTTTGAGTA 
GTAACGAATT TATCGAAATG CTAGTTCTTG ATGGTGCCTA AACGGGTCCG 
CGCATAATCC AAATGGTACA GAAACAAGGA AGTTGTTGCT CCAGCAGCAC 
TTCCCGAAGC TACATTTCCA GCAAACCACT TCAAGTAACC ATCTTTCTCT 
TTCGAACATC CAAGAAGGTT CTTGAAGTAA CCTTTAAAT

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 11211159 [Map]; Strand: c
  - AT4G20960.1 - [+] show detail - Cytidine/deoxycytidylate deaminase family protein
    Distance: -787; Region: promoter
Flanking Genome Sequence: ET13376 - 5-prime edge
```
GGCAGCCTTT TACAGGTTCA GCTGTAAAAC GAATAACTCT ATTCTTCCTC 
GGATATCAAG ATCGTTTTCC GGCCTCAAGC TCGTCTTTCA TCTCACT
```

AT3G50120.1

Model type: Protein coding
Short Description: Plant protein of unknown function (DUF247)
Computational Description: Plant protein of unknown function (DUF247); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50170.1); Has 1189 Blast hits to 1046 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1189; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G20960.1

Model type: Protein coding
Short Description: Cytidine/deoxycytidylate deaminase family protein
Curator Summary: encodes diaminohydroxyphosphoribosylaminopyrimidine deaminase catalyzing the second step in the riboflavin biosynthesis
Computational Description: Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding, diaminohydroxyphosphoribosylaminopyrimidine deaminase activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Riboflavin biosynthesis protein RibD (InterPro:IPR004794); BEST Arabidopsis thaliana protein match is: cytidine/deoxycytidylate deaminase family protein (TAIR:AT3G47390.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR