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ET13377

CSHL Arabidopsis genetrap mutant lines

Original: ET13377

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13377

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20367890 [Map]; Strand: c
      • AT3G54960.2 - [+] show detail - PDI-like 1-3
        Distance: -1050; Region: intergenic
      • AT3G54970.1 - [+] show detail - D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
        Distance: 278; Region: intergenic
    Flanking Genome Sequence: ET13377 - 3-prime edge 
    GTAGAGGTTT TTACCGACCG TTACCGACCG TTTTCATCCC TAACTACAAG 
    CAGTTTTAAA GGCATTCCAT ACGGACTATA TTTTTAGTTT GCTTTTATTT 
    TTAGTACTCA CAACTCTTTA TATTCAATAC TTTGACGTTG ATACACATAC 
    ACACTTGTGG ATTTGGAGGG TCATATCAAC ATCATAACCA TGTTTTGGGA 
    AGTGATAGTC GTTGTGGTTT AGCATATTAA CATATGTATA CAGTCTTGAC 
    ATTTCTTGAC ACTGATTACT TTCATGAGAT CTGTTTAATA AGTTACCGGA 
    GTATCTCCAT AAAATCCGTT AAATAATATG TTCTACTGAT CAATTATACA 
    GATATATATA ACTGAGAACC TTTTAAACAT TAGATCATTA AAATTATAAT 
    GAGTGATGAT TTGGGAAGAT ATTGGCGTCA ATACAATTAC AAACCATAGA 
    CGAATCAACA TTTCAGCTAT TTGGCAAAAT CATGAAGAGC ACTAAAAGGC 
    CTTCAACGGG AACCCTTCTT TAATACCTCT CTCCATTATC GCTTTCTACT 
    CCAACATAAC AGTGACAAAC AAAAACTTTA AAGTGATTTC TATCTTTGAT 
    TTGACTCAAA AGACAAGAAC AAAACCAATG ATTCTAAGGG TAATAAAAGT 
    AACAAGCTTT ACCTTGATTA ATTCAGTGAT CAT

AT3G54960.2

Model type
Protein coding
Short Description
PDI-like 1-3
Curator Summary
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.
Computational Description
PDI-like 1-3 (PDIL1-3); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: response to endoplasmic reticulum stress; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-4 (TAIR:AT5G60640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G54970.1

Model type
Protein coding
Short Description
D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
Computational Description
D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544); Has 125 Blast hits to 125 proteins in 56 species: Archae - 2; Bacteria - 46; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link
InterPro Scan - TAIR