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ET13378

CSHL Arabidopsis genetrap mutant lines

Original: ET13378

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13378

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25177 [Map]; Strand: c
      • AT5G01070.2 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET13378 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTTAAAA GGAAATTAAG 
    GAATCTATTT CCTCTACATA ATCTCCGATC ATCGGAATCG CTTGTAGCCA 
    CCATCGTGGG TGTATTTCCG GCCTCTACGT CATCTACATT GGTTTCAACC 
    GTTGTTTGAC CAATCTCATT GTCAACTTTA AAAAAGTTTT GAGCTATCGA 
    ACGACAAATC TCGCAAGTCC TAAAATAAAA GTTACGATTC TTTGTAAAAT 
    CTAACAAATG TTTAAAAGAT TAATGAAAAG AATGATTGGT TTTAGTTTGC 
    TTACTTATTA CCCTTGATCT TGAACCAAGT ATCGGCACAT TGCTTATGAA 
    CATAACCCAA ATCATCTTTA CAAGAACATC CAAGAACCAT TGGATCTCCA 
    CATTCATGAC AACTACTCAC TAAACCCAAA TGGCAAATCC GGCAATCTTT 
    CTCCGGAGAC CCTCTGATTG ATCCAGAGGC TACTGATTCT GTATCTGTTT 
    CGTCGTCCAA ATCATCAGCA ATCTCAAACT CGCCGCATAA GCTACGAACA 
    GCTGAGTGAA AATCGTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 178062 [Map]; Strand: c
      • AT4G00413.1 - [+] show detail - pseudogene, similar to tomato ripening associated membrane protein, blastp ma...
        Distance: 0; Region: exon1 (NonCoding)
      • AT4G00416.1 - [+] show detail - methyl-CPG-binding domain 3
        Distance: -960; Region: promoter
    Flanking Genome Sequence: ET13378 - 5-prime edge 
    TACTTTATCC CTGCTTAGCT CGGAAGTTGT CTCTGACCAG AGCTGTGTTC 
    TACATGTTTA TGCAATGTCT CGGAGCCATC TGTGGTGCCA TCTGTGGTGC 
    CATCTTTAAG ACTAGTGAAT ATCGGCGCAT CTTTAAGCCT AGTGAATTTC 
    GGCCCATCTT CAAGACTAGT ATGGAGGCCT GTTAAGGGTC TTCTAATACA 
    GCTCAACAAG CCTTTTTGTG TAAGCCTAGT GAATTTGTAA TACACTTTGT 
    CTCTGGTCAA ACACTTTCAT GCGTTTTTTT TATAAATATG TTTAATGAGC 
    ATAAATGTGC GGCTCAAAGC GGTGCAACTC CCAACGGTCA AATAAACAAA 
    TTAAGCTCAA TTGCTCAAGT AGTGAGAACA AGATCAACCT AACTTGCACA 
    ACGAAGAATT TTTGTTGTTG TTGTGGTCAT ATATATTTTT ACACTAACTA 
    ATTATTTTGA CAAAAGTAAT CAATTTGTGA CATTCTACAA AAAAATATAT 
    ATAAATAATC GAATATAATT TTTCTATTGG TCAAAATATC GATTGCAAAA 
    TACAAAAATC AAGGCATAAC AAGTTAATGT ATAAATTATA GCCGCGTTTT 
    AAAATTAAGT CGTGTGTTTT GCGGTTTTGT CCTCGATTTT GTTCCTTCCT 
    TTGTGTCGAA TTAGTCCTAC ATTTTATAGA GAGGTCTTCT TGACCCTAAT 
    CCACGTGGGA TTTTGACTCG AGCCACCGTC TCTATTGAAA TGATAAGATC 
    GTTTCTAGAA TGAGGTTACG G

AT4G00413.1

Model type
Pseudogene
Computational Description
pseudogene, similar to tomato ripening associated membrane protein, blastp match of 91% identity and 4.3e-11 P-value to GP|395044|emb|CAA52067.1||X73847 tomato ripening associated membrane protein {Lycopersicon esculentum}
Link
InterPro Scan - TAIR

AT4G00416.1

Model type
Protein coding
Short Description
methyl-CPG-binding domain 3
Curator Summary
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
Computational Description
methyl-CPG-binding domain 3 (MBD3); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 4 (TAIR:AT3G63030.1); Has 103 Blast hits to 103 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01070.2

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G05830.1); Has 886 Blast hits to 882 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 307; Fungi - 14; Plants - 509; Viruses - 15; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR