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ET13380

CSHL Arabidopsis genetrap mutant lines

Original: ET13380

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13380

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET13380 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTTGTTG GTGGCCGGTA 
    AAAATTACAT CTCCCGCCCA CCGCCGTCGA GAATAATCCA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 672625 [Map]; Strand: c
      • AT2G02500.1 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: 0; Region: exon3 (CDS)
      • AT2G02510.1 - [+] show detail - NADH dehydrogenase (ubiquinone)s
        Distance: -680; Region: promoter
    Flanking Genome Sequence: ET13380 - 3-prime edge 
    CGGTAGAGGA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACCTCCA 
    GCTAAAAGAA TCACAGATAC ACTCTTCTCC TTCACAACAA CATTGCTCTG 
    AAAAACATAA GAGATAAAAA AAAAGCTTCA AAATTTGAGT TGATTCAAAA 
    CTTTAAACTT ACATTCACAG CATTGCTCTG AAAAACAAAA AAAACTTAAA 
    CTAGAGATAA AGCTTCAAAA CTAAGTGATT CCAAGTTTTG AACTAACACT 
    TACATTATCA AATCCAGTCG ATGAAGAACA CTTGATTGAC AATAATAAAG 
    CATCTCTTTT GTAGCTTCTA TTAACCCTTT TCGAAAAATC CAGTTTTTGA 
    ACTGAAAAAT CAACATTCAG AAACAATCAA AAATCTCCTC ACCGAACCAG 
    AGATTCATTG GTTTGAACGT ATATAAAGAG TATGAGAAAT TGCCTTGAGA 
    ACGATAGCTA AACCCCAGAT AAGAGTTCAA TTTGACTTTA AGCTTCGGAC 
    ACAGAAATGT CGGAGAAGTA ATGAAGCCAA GATTCGTCTG AAGCATCGCC 
    ATGTTTTAT

AT2G02500.1

Model type
Protein coding
Short Description
Nucleotide-diphospho-sugar transferases superfamily protein
Curator Summary
Encodes a protein with 4-Diphosphocytidyl-2C-methyl-D-erythritol synthase activity. The enzyme has an absolute requirement for divalent cations (Mg2+ reaches the highest catalytic activity).
Computational Description
ISPD; FUNCTIONS IN: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity; INVOLVED IN: response to light stimulus, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast, chloroplast stroma, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase (InterPro:IPR001228), 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site (InterPro:IPR018294); Has 6821 Blast hits to 6815 proteins in 2244 species: Archae - 30; Bacteria - 4964; Metazoa - 52; Fungi - 6; Plants - 61; Viruses - 0; Other Eukaryotes - 1708 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02510.1

Model type
Protein coding
Short Description
NADH dehydrogenase (ubiquinone)s
Computational Description
NADH dehydrogenase (ubiquinone)s; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, B12 subunit (InterPro:IPR012576); BEST Arabidopsis thaliana protein match is: NADH dehydrogenase (ubiquinone)s (TAIR:AT1G14450.1); Has 55 Blast hits to 55 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 50; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR