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ET13390

CSHL Arabidopsis genetrap mutant lines

Original: ET13390

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13390

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6771479 [Map]; Strand: c
      • AT1G19560.1 - [+] show detail - pseudogene, putative CHP-rich zinc finger protein
        Distance: -727; Region: promoter
    Flanking Genome Sequence: ET13390 - 3-prime edge 
    CTTTATCCCT GTGTTCGAGA TATGGAAATA ACCTAGTCAG TAGTAAAGTC 
    TCACCCCCAA CCTTCCACTA TCAATTTCTT TTGCACCGTT TTTCTCTGTA 
    CGTAACTGTT CACTCTGCTG TGAAAGAAGC TCGAGCATGA TGATCGTGAC 
    ACTAAACCGT CCAATCTCCG GAGGTTACGA CGTTTAATTA AAAGGACATT 
    GACACTACAT AGAGTTCCGG TTTTGGAAAG CTTGCGTCTC AAGTTTTGTA 
    CTTTACCATT TCAACCAGAA GATATCAAAC TATGCGTTGA ATATTCATCT 
    CACTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9136277 [Map]; Strand: c
      • AT2G21340.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon14 (3UTR)
      • AT2G21340.2 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon14 (3UTR)
    Flanking Genome Sequence: ET13390 - 5-prime edge 
    TGTTCTTAAA GAATACAATC TTGAAACAGA GTAACACATT GATCTACAAC 
    TGAATGAAGC TGTTCTCTGT TCATTATACT TTTTCTTGTG AGGTATACGT 
    TGACTTGCTG AGCTACGCAG CTTTCACTTT CTCAGTGTAT CGGCTTGTAT 
    CTTCGGAGTA CAGTACACCA TCCCTCGATA GAAGGCGGAA AAGAGATAGA 
    GAAAACCGAG CCTGAAATAT TTGATGTTAG ATTTAAGAAG AGCAAAAGAT 
    ATATGAAGTT CTGGGTATTG TGGCTTAGTA AAGGCCGTAG CAATTTTTAC 
    CCATTGGAAT CCCACGAGAG CGTACC

AT1G19560.1

Model type
Pseudogene
Computational Description
pseudogene, putative CHP-rich zinc finger protein
Link
InterPro Scan - TAIR

AT2G21340.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G39030.1); Has 7799 Blast hits to 7783 proteins in 1733 species: Archae - 152; Bacteria - 6456; Metazoa - 30; Fungi - 49; Plants - 387; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G21340.2

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G39030.1); Has 7873 Blast hits to 7863 proteins in 1757 species: Archae - 156; Bacteria - 6520; Metazoa - 33; Fungi - 48; Plants - 395; Viruses - 0; Other Eukaryotes - 721 (source: NCBI BLink).
Link
InterPro Scan - TAIR