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ET13396

CSHL Arabidopsis genetrap mutant lines

Original: ET13396

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13396

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9738416 [Map]; Strand: c
      • AT1G27940.1 - [+] show detail - P-glycoprotein 13
        Distance: -287; Region: promoter
    Flanking Genome Sequence: ET13396 - 3-prime edge 
    AAACGGTAGA GGTTTTTACC GACCGTTACC GACCGTTTTC ATCTGGTTTT 
    ACACATCAGT GTGGAGCTGC TCACTTTGTA TCATGAGTGT AAACGTTTTC 
    ATCATGTTTA ATTTTAGGGT GAAAGGATAC GTAGACAATT GGTAGTTATT 
    GATAAAATTG ATCCCTACTA CTCTGACATG CACAATAGAA TATGTTTAAT 
    TTGATAAGAG TATAACGCAT AGTTGAGATA TATATATGTA AAACTTATGG 
    TGAATGTTTT TTACGTGACG CTAGAAATGA ATATGAAAAG AATATTGCAT 
    GGTAGGTTTG AGGAACAAAT CGTTGTCAAA CTTGTTATTA TCGTCTTTAA 
    GTAATGATAC TACGTGTACG AAAGCAATAC GCGGCTGTTT TTCATCCATG 
    AAACTTTATA AATCTTGAAT ATTTATTCAT GTGTACTGGT TGTTAGAGAA 
    ATAAATTGGT AAATATGTTT GAGCTGTCAC AAAGCTATAT CCACAGTTTT 
    TGTGATGATT TGATCAACAT ATTACTCTCG AGACGATTTG CGGTTTGATG 
    TAATATTACA ATGTTTGATC AATTAATTGA TCAAAGACAA AGCGCAAAGA 
    CGAAAATTCC GGTGAACAAT GTTTACGAAA AACTCGAATT TCAGAATTTA 
    CAGCTTTTGG AATGGGCAAA AATTACAAAA TTAAAACGAA AATCAAATTT 
    TATCGAGCTT GTATTTGGAG ACAAAGTTTT TTGTTTATAT GCT

AT1G27940.1

Model type
Protein coding
Short Description
P-glycoprotein 13
Computational Description
P-glycoprotein 13 (PGP13); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 14 (TAIR:AT1G28010.1); Has 859453 Blast hits to 396267 proteins in 4182 species: Archae - 14855; Bacteria - 669138; Metazoa - 18079; Fungi - 12603; Plants - 9342; Viruses - 61; Other Eukaryotes - 135375 (source: NCBI BLink).
Link
InterPro Scan - TAIR