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ET13398

CSHL Arabidopsis genetrap mutant lines

Original: ET13398

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13398

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 13699165 [Map]; Strand: c
      • AT1G36370.1 - [+] show detail - serine hydroxymethyltransferase 7
        Distance: -526; Region: promoter
    Flanking Genome Sequence: ET13398 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAATTG TATGTATTAG 
    AGTAGATTTG TCTTTGAATA TTGAAACCCG GACTAGTATT TGCCTAAAAT 
    ATATTGATTT TAATAAATTT ATTACAGTTA CAAACTAAAA TCTGTTATTT 
    TGATTCTTGC AAATATATCG GCGATAGTTT TCGCAAATGT TTGCTACGTA 
    ATATATGTCT ATTCTTTTGG TTTGATATAT TTATTTGGTT AATTTGTTTC 
    GTTTTCTGTA CGTATTTCTG AAAAATCTTA ACAAAATTTA TATATAAACT 
    TAATAACAAT GACCGCCAGA ATGTATAGAC GACTACCTGA ATCACTTTGC 
    ATTGCGTGTT GGTCCACTAG TTGCTTAGCA GCTGAAAAGC AAGGCAAAAA 
    AGAGAAAAAT TAATAGCCAT AAGGCTTAAT TTATATTTAA TATTAAAACT 
    TATGATTTCC AACAACAGTA ACGTCAATTT TCTTATTTTT AAAGGAAGAT 
    GTACAGATGA CTACGAATAT GTTTCTCATA TAAGCATAAC AACAACTGGG 
    ATAATATGAA TTTGACCATT TTTTCCCTTC AATTTTAAAA ATCAAACCAA 
    AACATGTATG ATCTTTTGGA CTGTATAATC TTTTGACAAT TTAACGCTCT 
    CAGAGTCCCA AAAACAATTT AACGCTTTTA ATGAAGGGAA GTTTTGAAAA 
    TGTACAACTA AATAAAGTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 13699106 [Map]; Strand: c
      • AT1G36370.1 - [+] show detail - serine hydroxymethyltransferase 7
        Distance: -467; Region: promoter
    Flanking Genome Sequence: ET13398 - 5-prime edge 
    TCCATCCTAC TTTCATCCCT GCATACAATA TACCATAGTC CAACTCCATC 
    CCATTTCGTC CACTTCTCAC TTTTCATGCG GTTTAACATT ACCAAAATCT 
    TGATGCTATT GGTATGGTCT ATTTTTGTTG GTAAAACTTT TTTTTTCTAC 
    TTTTTTGTTA TCATCCATTC ATACCCTAAT TACTTAAAGT AAGACAAAAC 
    TATTTAAGGA GATCAAAAGC TGATCTTGCA TAGTTGCATA ATAAGATATT 
    TATTTGAACT TATCTTTGCA CTTTGAAATC CTAAAATTTT TCTAACAAAA 
    AACCCTTTTA

AT1G36370.1

Model type
Protein coding
Short Description
serine hydroxymethyltransferase 7
Curator Summary
Encodes a putative serine hydroxymethyltransferase.
Computational Description
serine hydroxymethyltransferase 7 (SHM7); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: response to cadmium ion, glycine metabolic process, L-serine metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: serine hydroxymethyltransferase 6 (TAIR:AT1G22020.1); Has 11689 Blast hits to 11664 proteins in 2845 species: Archae - 258; Bacteria - 6485; Metazoa - 362; Fungi - 287; Plants - 350; Viruses - 6; Other Eukaryotes - 3941 (source: NCBI BLink).
Link
InterPro Scan - TAIR