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ET13399

CSHL Arabidopsis genetrap mutant lines

Original: ET13399

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13399

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 108376 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: intron1 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET13399 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACT 
    TAGCATAACG AATCAGACAG ACAAAAAGTG TCTGGATCCG TAGAGCAAAG 
    TGTTGTCGTG TCTTTGACAA AGTTCTTTGT TTGCCTAAAC CAATTTGTTC 
    ATCCGATAGA ATGAATTGCA TTCCGTTGTT ACTATCATCC AAACCGGAGA 
    TGTCAAGCCC TAACCCTCAA GTAGTATTTC TTAGAGAGCC ATGAATTGTT 
    TGTTTAGATC CAATTAGAAG AAGGTTTAGT TGACTGTGAT GATTGTTTGT 
    GTTTTTGGTG GCAGGACCAG GAGGCGCAGA GAGGGAGGAT GCAGGAGATA 
    GATCTTAGTG TTCACACTAT AAAGTCCCAT GGAGGAAGAG TCGCTTCTAA 
    ACACAAGCAC GATTGGATCA TACTCGTCAT CTTGATTGCC ATCGAGATAG 
    GCTTGAACCT CATCTCTCCT TTCTACCGCT ACGTGGGAAA AGACATGATG 
    ACTGACCTCA AGTACCCTTT CAAGGACAAC ACCGTACCTA TCTGGTCTGT 
    CCCTGTGTAC GCTGTGCTTC TTCCCATCAT AGTGTTCGTC TGCTTCTACC 
    TGAAGAGGAC ATGTGTGTAC GATCTGCACC ACAGCATCCT CGGGCTGCTC 
    TTCGCCGTCT TGATAACTGG TGTCATCACT GACTCCATCA AGGTAGCCAC 
    CGGACGCCCT CGTCCTAACT TCTACTGGCG CTGCTTCCCC GACGGCAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 108428 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: intron1 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET13399 - 5-prime edge 
    TCCTACTTTA TCCCTGATGC TAAGCACACC ACTGTTTCAT TAACAATGTT 
    TTCGTTGACT CTATTTAACT ACTTTATTTT CAATGTTAGG ATTTTTAAAA 
    TGATAAAGAA AAAAGGAGTA GAACAGAGAA TAGTCGATTG AGGTTACCTG 
    AGAATTGCGC CAGAATAAGA GAGAAGAGAA AAACGACCCT ATTGTCATCA 
    GAAAGTGAAG ATCTCGACTA AGAGATGAGA TGAGGTTAAA AAGAAATGTG 
    GATCTCGAAA CTTAGGAGTA AAACAGAGGA ATTGATCTAA CGAAGACTAT 
    AGATAAATAG TCCGATGAGG AGGAGGTAGA AGACGCGTTG TTAAACTTGC 
    GAGTTTTGTT TTGTTTCCCA ACTTGACGGT TTGATAGAAG AATAAGAAGA 
    AAACAGAGAG AGACATGATT AGAAACTCCT CTTCCTCTTG AATTTTGACT 
    TTTGACTTTT CAGTTATCGC CGGTCTGATA TGGCCTTCGT CTT

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR