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ET13400

CSHL Arabidopsis genetrap mutant lines

Original: ET13400

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET13400

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16290388 [Map]; Strand: c
      • AT4G33990.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13400 - 3-prime edge 
    AATGAAACGG TAGAGGTTTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    AATCCTGCAA CACAAATCTA TGGTCCGGTA CATACCCAAT CATCTTCAGT 
    TTCGCTTGTA ATGCCGTTAA TTCTCTGTAC ATCTCTTCAT ACATTGGATG 
    CGTTTGGTTT CCCGTGTAAA AGACTTCGAC TTTGTTGTCT ACTTCCGTCC 
    GTCGGCTACC CTCACGTTGA ATGGTTTGAC GGCCGTGATT TTCAGATTAA 
    GGCGATTGGC CGCTTTCTCA CTTATGAAGT TGTGTGTAGA GCCGCTGTCA 
    ATAAGCGCCA CCAACTCCTG CCAGTTAACC ACCGCATGTA CCCGCAACGT 
    TCGGGGTGTA TCCCAACCAG TTAGTGCCTG TAGGGTGATT TCAGGTTCGA 
    TTGGATTGTC GGGAAGTTCT TCCTCCTCCT CTTCTCATTC CATCGACCAC 
    CATGAGTAAC AGTTGAGGTT TTCGGCATTT TTGGCCCGGT GCGTAACGCT 
    CGTCACAGCT AAAACAGAGT CTCAGACTCC TCTTTCTCCT GAATTCGTCC 
    CATGACAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16290339 [Map]; Strand: c
      • AT4G33990.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13400 - 5-prime edge 
    TCCTACTTTC TCCCTGTGCA GGATGTTGAA GACGACGAGA AAGAGCATAT 
    CCTCATGAGT CATAGTGAAA GATTAGCTAT TGCATTTGCA CTTATCGCCA 
    CTCCTGCAAA GACAACGATT CGGATTTTTA AGAATCTAAG GGTATGCGGC 
    GATTGCCATA GCGTAACCAA GTTCATATCG AAAATCACTG AGAGAGAGAT 
    CATTGTGAGG GATTCAAACC GGTTTCATCA TTTCAAGAAT GGAGTCTGCT 
    CTTGCGGTGA TTACTGGTGA CGGCATAGAA AACCGATTAG TCAATATCCA 
    AAAACCGGTT CCAATTCAAT TGTGAACCGG TTAATCATGG TCTAGGAAGA 
    CTTTGGGTGG GAAAAAGATT CCAACTTTGC TTACGAAGGT TAAGTCGCAA 
    CAAAGAAAGC TTCTTTATTT CCGCCATGGA CACAGCCTGT C

AT4G33990.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
embryo defective 2758 (EMB2758); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G30700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR