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ET13403

CSHL Arabidopsis genetrap mutant lines

Original: ET13403

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13403

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3374661 [Map]; Strand: w
      • AT5G10690.1 - [+] show detail - pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing pro...
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: ET13403 - 3-prime edge 
    CGGTAGAGGA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGATCAG 
    GGTGCTTCAA GGTGAGCGTG AAATGGCAAC AGACAACAAG CTCTTGGGAG 
    AATTTGATCT AGTTGGCATT CCACCATCTC CAAGAGGAGT CCCTCAGATC 
    GAAGTGACAT TTGACATTGA TGCCAATGGC ATTGTCACTG TTTCCGCCAA 
    GGACAAGACG ACTGGTAAAG TACAACAGAT CACAATCCGA TCCTCTGAGT 
    GTTGCGCCTT CCAAGACGAG CACCATCAAT TCCAAATGAG TTGCTACTGA 
    TACAGATTTA GTTCTTTCAA TATATTCACT TTTGTCAGAA AGAAAATGAA 
    CAAGAAACAA AACCTTGTTC CCTAACCTTG TTCTTCTTCG AGTTCTCTTG 
    CAGCCTATGC TGTTGGAGAT TCCTTCTTCC CTTGCACCCC TTCCTTCTTT 
    GATCCTTCCT CTGGTAATTC TTCTATATGA GCCTTTGTTT CGGCTGTTTC 
    TTCTTTCACT CTGCTGCTTT CGCTCTCTTC CTCTTTAACT TCTGCTTCTT 
    CCTGTTCCTC TTGTTTACTT TTTTCGAAAT TCACAGCTTC ATTCATATCT 
    GTAGAAGTAG CAACTGTCTC GCTATTTTCC TCATCATCAA CTTTCTTGCT 
    ATCAAACTCC TCATAGATCT CAATCTTCTT GCTATCGACC AACACTTCTC 
    GTCTCTTCTG CCTAAACCCG CGGAACAAAT CACTCGTCTC AT

AT5G10690.1

Model type
Protein coding
Short Description
pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein
Computational Description
pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G12775.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR