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ET13404

CSHL Arabidopsis genetrap mutant lines

Original: ET13404

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13404

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13814098 [Map]; Strand: w
      • AT2G32540.1 - [+] show detail - cellulose synthase-like B4
        Distance: -588; Region: promoter
    Flanking Genome Sequence: ET13404 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAAC 
    GATAAAGTAT GTCTTCTTAC TCCTGATTCA AGTTTGCGCT TTGTGGTGAA 
    TGATGACTAG TCGCCACTCG TCACACACAA AATGAAGTCA AGTAATGTTT 
    CTTCATTTTG TTATTGGTTT TTGTTCCTAA ATCACTTATC TAGATATTGG 
    CTTCGTATGC CCTATTTTAT CTCTTAAATT TTCAAAAAAA TAACGTCCAC 
    ATAAACAGTT GACTTCAAAC CCCAAAAGTA GAAAGGATGA AATCATTGAG 
    TCATTTTCAT GAAATCGAAA AACCACGAAT CTTACAAAAA CAAAATCAAT 
    CAGGTCCTGT CATAGTTTTA AAACCCACAA AGATAAATAG TGTATTTTTT 
    TTTGGACCAG CCAAAAAAAA AGGGTCTAAA AGGGAAAAAA CCAAAAAATT 
    GGGAAAACAA AAAAAACCCT TAAAAAAGGC AAGGCATTTG TTTTGAAAGA 
    AAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 85494 [Map]; Strand: w
      • AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
        Distance: -265; Region: promoter
      • AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
        Distance: 0; Region: exon1 (CDS)
      • AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13404 - 5-prime edge 
    TTATCCCTAC CCGCCAGTCC GATGGGCAAA GAGACTCCGG CGGAGAAATC 
    CCTAAATCTG ATTCGCGGGA GACTCTGTGA TCCTAGTTAT GTCTTCAGAC 
    CTCTTTCCGC TTCGTCAGAT AGCAATTACA GGTCTGATTG CTTCACTCAC 
    TTGTCGCTTA ATTTCTCGAA ACGAATTTGC TTTTAACCTA ATAGTACAAA 
    CAAATTTGTC AACACACAGT AAATTGAAGT TCATTGTATC AACCTCTATC 
    ACGGAGGGAT GCAACAACTC GATGTTGCTT CTCGGCCCTC GCGGCTCTGG 
    CAAAGCTGCT GTATGTCGAA CCCTGCTTCC TTCTACTCTC TATCTCCGTC 
    ATTGGCGTTT GATTTCTTCT TTTATTTCAA AAAATGGGTT GATTTCAGGT 
    CTTGGATCTC GTTGTAGGTG ATTTATTGGA GCAGTTTCCT GATTCAGTAT 
    CAGTAGTATG TCTGATTTCT TATACATTTG GAACTATCTC CTATATCTAA 
    TCTCATCGTT ATGATCTTAC TACCATCTCA ATGTGATTGC AGATCAGATT 
    GAATGGACTC TTGCATAGTG ATGATAATCG TGCCTTTAAG GTCTAAGAGA 
    GGGAGAGAGC CCACCATTCT CATTTCCTAC ACCTA

AT2G01110.1

Model type
Protein coding
Short Description
Sec-independent periplasmic protein translocase
Curator Summary
mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein.
Computational Description
ALBINO AND PALE GREEN 2 (APG2); FUNCTIONS IN: proton motive force dependent protein transmembrane transporter activity; INVOLVED IN: thylakoid membrane organization, double fertilization forming a zygote and endosperm; LOCATED IN: chloroplast thylakoid membrane, receptor complex, chloroplast, integral to thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec-independent periplasmic protein translocase (InterPro:IPR002033), Sec-independent periplasmic protein translocase, conserved site (InterPro:IPR019820), Twin arginine-targeting protein translocase, TatC (InterPro:IPR019822); Has 5953 Blast hits to 5918 proteins in 1859 species: Archae - 177; Bacteria - 3492; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2203 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.1

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527); Has 675 Blast hits to 668 proteins in 199 species: Archae - 9; Bacteria - 0; Metazoa - 335; Fungi - 166; Plants - 90; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.2

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527).
Link
InterPro Scan - TAIR

AT2G32540.1

Model type
Protein coding
Short Description
cellulose synthase-like B4
Curator Summary
encodes a gene similar to cellulose synthase
Computational Description
cellulose synthase-like B4 (CSLB04); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase-like B3 (TAIR:AT2G32530.1); Has 2375 Blast hits to 2288 proteins in 474 species: Archae - 7; Bacteria - 756; Metazoa - 0; Fungi - 5; Plants - 1590; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR