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ET13412

CSHL Arabidopsis genetrap mutant lines

Original: ET13412

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13412

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16813075 [Map]; Strand: w
      • AT3G45775.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET13412 - 3-prime edge
    ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    GTAACCGCAT CGGACACAAC GCAGACACTT GCTATGCTGT GATTGGCTAT
    CCCGAGTGGT GGGGTGATAG ACCAAAAGGT AGAACACTAC AAGGCAGAGG
    TCGCGGTGGA GCGAGCTCTA GTGGAGGAAG AGGCAAAGGA CAAATGACTT
    ATGCTAATCG GGTGAATGTT CCAAGCATTG AGAATCAAAA CCAAGAACAA
    GTGAACCATG TTCATACTGA TCAAGATCGT GATGCAGTAA GCGGTCTGAG
    TGAGCAACAA TGGCGCACAA TTAAGTCCAT TCTCAATGCT GGCAAGGAGA
    ACACCACCGA GAAACTCACT GGTAAGTTAT CGTTTCCCTC TTGGATTATG
    GACACAGGTG CTTCTCACCA TTTAACGGGC AGAATGGATG CTCTGTCAAA
    TGTTAGAAAT ATGTCACCTG TCTTGATTAT TTTAGCTGAT GGAAGAGAAC
    AAGTTTCGTT TAAAGAAGGA TCAATACGTC TTGGTTCTAA TCTGGTTATG
    AAGTCGGTTT ACTTTGTGGA AGGTTTCAAA TCTGATTTGA TTTCTGTGGG
    ACAGTTGATG GATGAGAACA GTTGTGTGGT TCAGATGGCT GATAGTTTTC
    TTGTGGTTCA GGACCGAGTT TCGAAGATGG TGACTGGAGC TGGTAAGAAG
    AATAGGAGGA AACCTTTCAC TTTCGCAGTA CGGAGATCGC AGCAGCAGTC
    ACAACGAGGG ACGATAAGTC GTTTGAGCTG TGGCATAATA GGATGGGTCA
    TCCTTCTGCA
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9174904 [Map]; Strand: w
      • AT1G26558.1 - [+] show detail - other RNA
        Distance: -707; Region: promoter
      • AT1G26558.2 - [+] show detail - other RNA
        Distance: -738; Region: promoter
    Flanking Genome Sequence: ET13412 - 5-prime edge
    TCCTACTTTA TCCCTGATAA TAAGAGGGGG CCACAAAAAC ATCCACACTT 
    TCACATTATC TCACGCCATA CACTCGTTCC AATCTCACGA TCCCATGAAG
    ATCTCTCTTA TCTAAACACA TTTTATATTT TTGTTCATTT GTTAAATAAA
    CACATTATAA TTGGAAATAA AATTCTATTT ACCGGAATTT TTCGTTCTTT
    AATAAATGGA TGGAGGCATG GAGATCTACC AATCAAAGAG CAAATACTAC
    GGTTTTATAA GATATATTAT TTTTATTCAA CCTTATTGAG TCAACTGATC
    AGTATGTTAA ATATTCACAT TGTTAGTTGA AAAACTATTT TTTTATATAG
    TTATTTTGAT ATGATTTCAA TAATAAATGG TTTCTATAAA TACTTCAAAT
    GATAAAAATA TATGATTTTT CTTTTTGTTC TTGAGCATAG TGACAATAGT
    CTATACTTTA TCTTGAAATC TTTTTTTTTT TAAATAAAAT ACTTAGGCCC
    TGTTTGTTGG GCCTTTTGAA TAAACCTTCC CAAGGAATTT AAAAACTAAG
    GTTGGTTTTC CAGGTTTTAA AAAACCACC

AT1G26558.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR

AT1G26558.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR

AT3G45775.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 9.5e-189 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)
Link
InterPro Scan - TAIR