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ET13417

CSHL Arabidopsis genetrap mutant lines

Original: ET13417

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13417

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET13417 - 3-prime edge 
    GGGGGGGGGG GGGGGGGGGG GGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16631203 [Map]; Strand: w
      • AT4G34900.1 - [+] show detail - xanthine dehydrogenase 2
        Distance: 0; Region: intron1 (CDS)
      • AT4G34910.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -330; Region: promoter
    Flanking Genome Sequence: ET13417 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACTCAG 
    AGGTGCTTTT AACTCTATAT TATTGATTTC TTCAAATGCT TATATCTAAT 
    CTAAGTTTAG ATAGAGTAGA GAAGCCACAA ATTGTACAAT GCAGCAAAAT 
    TTAGAGGGTT AGGTTGTTGT GTGGTGGGAT TCTTGAAAAC GTTTTTTGTT 
    TCCTTTAGAT TTAGGATTGA CCGGGACAAA GCTCGGATGC GGCGAAGGTG 
    GTTGTGGGTC TTGCACCGTG ATGGTGTCTA GTTATGACCG AGAGTCAAAG 
    ACATGTGTGT GCGTATCTTT TTCTCTCATA GGTTGCATCT GCTTTGCTTA 
    AGTTTAGGCC TTCTTATACT GTTCTCTNCA ACTCGACTAT ATNGCAGGCA 
    TTATGCTGTC AACGCTTGCC TAGCACCTCT CTACTCTGTA GAAAGGATGC 
    ATGTAATATC CATTGAAGGA GTTGGTCATC GGAAACTTGG CTTGCACCCT 
    CTTCAGGGGG GGTTTACTTC TTCCAGATTT TTTTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19219800 [Map]; Strand: c
      • AT3G51820.1 - [+] show detail - UbiA prenyltransferase family protein
        Distance: -743; Region: promoter
      • AT3G51830.1 - [+] show detail - SAC domain-containing protein 8
        Distance: -321; Region: promoter
      • AT3G51830.2 - [+] show detail - SAC domain-containing protein 8
        Distance: -341; Region: promoter
    Flanking Genome Sequence: ET13417 - 5-prime edge 
    GAGACTTGAA GGTAATTTTG CCTTGAGGGA ACATGAAGAG ACTGAAGGTT 
    GATATTTTTA TTAGAAAGCC AAAAAAATCA CCCCAGCCAA CATCACACTC 
    ATAGGACACA CATTAAAAGA TATATCAGGG GCTTATATTT TTATCAAATA 
    CATGAATTTT TTGTTTTTAA GATATCAACT ACAACTAGAT GTATCATAAT 
    CCCTTTGTTA GATTTATTAT TCTTTTCGCC CTAATATCTT ATAATAGCTA 
    ATAGCCATTA ATAAAGAAGT AATAGCTTTC ATTGAAGTGA GTCTACTCTA 
    AATAGGATTT CCACAGTAGG AAAACTAGAC ATCAGGAAAT TTATTCAATC 
    AAGACGACTT ATGTAATAGA GTAATCCCCG AAGGTATTGA GCAACTATAG 
    ATATATGTTA TCGATTATTT AATGCACGAT ACAATTCGGG ATGATTTTAT 
    AATCAAAAGA TTCGAAACCC GAAATCACAT TTATTTCGCT AATATTGCTA 
    GCTTTGGTTA GCTTTTAAAA TTGCGTATTT GTATTTTTAT TGTTAAATTT 
    TATGATTTCA CCCGGTATAT ATCATCCCAT ATTAATATTA GATTTATTTT 
    TTTGGGCTTT ATTTGGGTTT TCGATTTAAA CTGGGCCCAT TCTGCTTCAA 
    TGAAACCCTA ATGGGTTTTG TTTGG

AT3G51820.1

Model type
Protein coding
Short Description
UbiA prenyltransferase family protein
Curator Summary
Encodes a protein with chlorophyll synthase activity. This enzyme has been shown to perform the esterification of chlorophyllide (a and b), the last step of chlorophyll biosynthesis. Although it can use either geranylgeranyl pyrophosphate (GGPP) or phytyl pyrophosphate (PhyPP) as substrates, the esterification reaction was faster with GGPP than with PhyPP.
Computational Description
G4; FUNCTIONS IN: chlorophyll synthetase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bacteriochlorophyll/chlorophyll synthetase (InterPro:IPR006372), Chlorophyll synthase, ChlG (InterPro:IPR011799), UbiA prenyltransferase (InterPro:IPR000537); BEST Arabidopsis thaliana protein match is: homogentisate prenyltransferase (TAIR:AT3G11945.1); Has 2782 Blast hits to 2782 proteins in 800 species: Archae - 310; Bacteria - 1584; Metazoa - 63; Fungi - 24; Plants - 236; Viruses - 0; Other Eukaryotes - 565 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G51830.1

Model type
Protein coding
Short Description
SAC domain-containing protein 8
Curator Summary
putative transmembrane protein G5p (AtG5) mRNA, complete
Computational Description
SAC domain-containing protein 8 (SAC8); CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: Phosphoinositide phosphatase family protein (TAIR:AT3G51460.1); Has 1752 Blast hits to 1640 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 573; Fungi - 577; Plants - 291; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G51830.2

Model type
Protein coding
Short Description
SAC domain-containing protein 8
Curator Summary
putative transmembrane protein G5p (AtG5) mRNA, complete
Computational Description
SAC domain-containing protein 8 (SAC8); FUNCTIONS IN: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: Phosphoinositide phosphatase family protein (TAIR:AT5G66020.1).
Link
InterPro Scan - TAIR

AT4G34900.1

Model type
Protein coding
Short Description
xanthine dehydrogenase 2
Computational Description
xanthine dehydrogenase 2 (XDH2); FUNCTIONS IN: in 8 functions; INVOLVED IN: oxidation reduction, allantoin biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase (InterPro:IPR016208), Ferredoxin (InterPro:IPR001041), Molybdopterin dehydrogenase, FAD-binding (InterPro:IPR002346), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), FAD-binding, type 2, subdomain 1 (InterPro:IPR016167), [2Fe-2S]-binding (InterPro:IPR002888), FAD-binding, type 2 (InterPro:IPR016166), CO dehydrogenase flavoprotein, C-terminal (InterPro:IPR005107), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 (InterPro:IPR016169), Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead (InterPro:IPR000674), Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: xanthine dehydrogenase 1 (TAIR:AT4G34890.1); Has 21587 Blast hits to 20745 proteins in 1345 species: Archae - 453; Bacteria - 12993; Metazoa - 1073; Fungi - 109; Plants - 266; Viruses - 0; Other Eukaryotes - 6693 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G34910.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 35246 Blast hits to 34671 proteins in 2939 species: Archae - 524; Bacteria - 16250; Metazoa - 5646; Fungi - 4238; Plants - 2336; Viruses - 4; Other Eukaryotes - 6248 (source: NCBI BLink).
Link
InterPro Scan - TAIR