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ET13431

CSHL Arabidopsis genetrap mutant lines

Original: ET13431

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET13431

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4487903 [Map]; Strand: w
      • AT5G13920.1 - [+] show detail - GRF zinc finger / Zinc knuckle protein
        Distance: -470; Region: promoter
      • AT5G13930.1 - [+] show detail - Chalcone and stilbene synthase family protein
        Distance: -785; Region: promoter
    Flanking Genome Sequence: ET13431 - 3-prime edge
    TAGAGGTATT TTACCGACCG TTACTGACCG TTTTCATCCC TAGACCTAAC 
    AATAGTTTTA ATTGGAAAAA TTATACCATA GGCCCACATG GGTTATGAAC
    CATATGTGCC GGGCCCATTA TGACAGAGAA ATCACAAAAC CCGATGCGTG
    AAAATTCAAT TGCAAGGAAG GACTCCAAAC CGTTTTCTTT TAATCCGGTT
    GACCCGGCCT ACCAAAACCG CCAAATCCAT TATTGACGGT TAAATATGAT
    AGGCATGCGA GGCGTAGACG CCGTAGAGTC ATATCCGCAG AAGCCTATAG
    GTGTTATTTG GTCAGCTGTA GTTTTTAACC GATCAGAACG ACATGGTTCT
    CATATTATAC ACAACACACT TGTTTCGTTA ATCTGCTTAA AGTCTTCAGG
    CCCATTAAGC CCGTCCCATA TTCAGCATGT TTTGTTTAGT CATAGCTAAA
    AATAAATTAT GTGGGCTTAA AAAAGATGAC CTGGCCCATA TTAACATCCC
    GAGAAGGAGA ATGTTCGACG AATGCTTAAC GGCACAATGC AGACCGGAAA
    TTGCTTCCGA TGCCGTCAGG CTGGCCACTG GATCAACGAT TGTCCTCTCA
    AATCCTACAC CGATGATCCT CCACCGGCGA TCCAATGCCC ATGCGGCGGA
    GGTTTCTGTG AAATC

AT5G13920.1

Model type
Protein coding
Short Description
GRF zinc finger / Zinc knuckle protein
Computational Description
GRF zinc finger / Zinc knuckle protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, GRF-type (InterPro:IPR010666); BEST Arabidopsis thaliana protein match is: GRF zinc finger / Zinc knuckle protein (TAIR:AT1G54930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G13930.1

Model type
Protein coding
Short Description
Chalcone and stilbene synthase family protein
Curator Summary
Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism.
Computational Description
TRANSPARENT TESTA 4 (TT4); FUNCTIONS IN: naringenin-chalcone synthase activity; INVOLVED IN: in 11 processes; LOCATED IN: plant-type vacuole membrane, endoplasmic reticulum, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Chalcone/stilbene synthase, active site (InterPro:IPR018088), Chalcone/stilbene synthase, C-terminal (InterPro:IPR012328), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT4G34850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR