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ET13434

CSHL Arabidopsis genetrap mutant lines

Original: ET13434

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13434

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13128314 [Map]; Strand: c
      • AT4G25810.1 - [+] show detail - xyloglucan endotransglycosylase 6
        Distance: -329; Region: promoter
    Flanking Genome Sequence: ET13434 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACT 
    GATCACCGAT TCTAAAGAAG GCTCATCCTT TGGATAATAG TATGAAACTT 
    GTCAATAAAG ATAAGTCATC ACAAGAAGGG AGATCTTAGC TGTGTTCCAT 
    ACGCCCATCT CGAAAAAGCG ACGATGGTCA AGATTAAATA ACTGTATTTG 
    AAAAACCAAA ACCGCGTCAC CAACTCCAAA GCCATTACCA TTAGCCATCA 
    CTTTCCATCT TCCAGCTGTT CGAATCAGGA CGCCCCTTTT TCTTCACCAA 
    ACCCATCGGC CGATAACGAA CCTTCCTCTC TGACTGCCTC TGCTCTTACT 
    ATAAATACAA CCAATACGAC CTCATCCAAA ACCCAACAAA CCTAAGCTCA 
    AAGCCCACCA AAAAGAAAAC AATCACTTAG CAATGGCGAT GATCAGTTAC 
    TCCACCATTG TGGTTGCTCT GCTTGCTTCT TTTATGATTT GCTCTGTTTC 
    CGCCAATTTT CAACGAGACG TAGAGATAAC TTGGGGAGAC GGACGTGGAC 
    AGATCACAAA CAACGGCGAT CTTCTTACAC TCTCTCT

AT4G25810.1

Model type
Protein coding
Short Description
xyloglucan endotransglycosylase 6
Curator Summary
xyloglucan endotransglycosylase-related protein (XTR6)
Computational Description
xyloglucan endotransglycosylase 6 (XTR6); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: Xyloglucan endotransglucosylase/hydrolase family protein (TAIR:AT5G57560.1); Has 2255 Blast hits to 2235 proteins in 316 species: Archae - 0; Bacteria - 302; Metazoa - 0; Fungi - 455; Plants - 1384; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).
Link
InterPro Scan - TAIR