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ET13439

CSHL Arabidopsis genetrap mutant lines

Original: ET13439

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13439

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 431820 [Map]; Strand: w
      • AT2G01940.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: -455; Region: promoter
      • AT2G01940.3 - [+] show detail - C2H2-like zinc finger protein
        Distance: -455; Region: promoter
    Flanking Genome Sequence: ET13439 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAAAT 
    AGTTGTATTG TATCTGCAAA TTAGGAGAGA ATTTATGAAT ATCGATACGG 
    TGCTAACTCT TAGATGATGT AAGAAGCAAT TAAATAATAA GGTTAAGATA 
    CTTCATTACT TCTAATTAAC TTTTTGACTG TCACTCTCAA GTCCTATAAA 
    TAGTGTGATT ATACATCACT AATACATCTT GCGTTTCATT ATTGTTAAAG 
    CAATCCAATA ATATATAGAC AATTTAAGAA AAATTGTCAT TGTTAACTAT 
    ATATGAATGT TATGTCATCA TGTTTCCAAC GTTGGTCCAC ATACATGTTA 
    AGATTCTTTT CGAATTACAC TTGGAAACAA GGAGAGAAAA AAAAAGGTAT 
    ATGGTTCTTG TGAATAATCC AAGGATAAAA ATGCATTATT GCATTAAATA 
    CCAAATTCTG TAAGTTTACA ATAATGCAGA CAAACTATTA TTTTTTCTTT 
    CTATTGGGCT TATATAATGG ATGTACTAGT GCCCATACAT AGTTAGGGGA 
    AGAAAAAAGA CAAATATATC AAATTATACA TGCGTATAAA AATAATT

AT2G01940.1

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Curator Summary
May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.
Computational Description
SHOOT GRAVITROPISM 5 (SGR5); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.1); Has 34856 Blast hits to 17366 proteins in 321 species: Archae - 1; Bacteria - 0; Metazoa - 32828; Fungi - 237; Plants - 754; Viruses - 1; Other Eukaryotes - 1035 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01940.3

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Curator Summary
May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.
Computational Description
SHOOT GRAVITROPISM 5 (SGR5); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.1); Has 13187 Blast hits to 8766 proteins in 255 species: Archae - 0; Bacteria - 0; Metazoa - 12025; Fungi - 55; Plants - 746; Viruses - 1; Other Eukaryotes - 360 (source: NCBI BLink).
Link
InterPro Scan - TAIR