1. Home
  2. Mutant Lines
  3. ET13440

ET13440

CSHL Arabidopsis genetrap mutant lines

Original: ET13440

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13440

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3083900 [Map]; Strand: c
      • AT1G09530.2 - [+] show detail - phytochrome interacting factor 3
        Distance: 4361; Region: intergenic
      • AT1G09540.1 - [+] show detail - myb domain protein 61
        Distance: -2259; Region: intergenic
    Flanking Genome Sequence: ET13440 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACC 
    TGCATGAACA ATGGCAAATT GTGGGAACTT TACATATCGC TTCTCTCAGA 
    CTCTGAGCAC TTCTATAAAG CTACACTTTC TGACCAAGAC ACTAGTCTGA 
    CTCTTTGGTT CTGCCATTTC CAACCAGCAC CAGTTGCTGG ACCACTTGCT 
    TCTCCATCTT AATGAAGCCA CAAATGAACA CATTCTCCTC AAAGCTTCCT 
    CTCAATTTTT TGCAAAATAT TTGAAAACCA TTTTCTTGTT TTCCTATTAA 
    AATTTGTAAT ATATAGTAAA CTTTTAACAG TAATAAAGAA AAAAGATTAG 
    TAAGTTCTCT TTTTTAATTC ATATACGTGT AGTCTTTTTT CCACGATATT 
    TTTAGGATTG GGTCCCAATA AACAAATGGA TAAACGGTAA GAGTCTAACG 
    AGAGGCCGTC TCTAGATAAC GTAAGAAAGC TACAAAAATT CAACATGTGA 
    ATATTTGAGG GAAAGTTTGA GTGGATGGAC AAAGAATATA CCCTCTCTAT 
    TATGAATCAT TTTAAGGCAA AAAAAGGGAG AAAGATGACA AAGAGAAGTG 
    AGTCAATTTA ATTTAAAACG TATAAAGCAA ACAAAAGAGA CACTTGATTA 
    TTCTCATTCA TCTGCAAAAG TAACCATATT TTTTAAGCAA AATTTCTAAA 
    TTTCGTTATG TAGCCATTTA ATCCCATTTA ATCATTTTTG GAAACATTAA 
    CCAATGATGA CAATTTCTTG CTGGTTATGA ACCTTCCCAT TATTCCTTTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16631264 [Map]; Strand: w
      • AT4G34900.1 - [+] show detail - xanthine dehydrogenase 2
        Distance: 0; Region: exon1 (CDS)
      • AT4G34910.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -269; Region: promoter
    Flanking Genome Sequence: ET13440 - 5-prime edge 
    CTTTCTCCCT GCTCTGAGAT TTCCAGAAGC GTCATGTGAG CTAATCCATC 
    AGGCAAAACT CTACGAACAC CATTAACGTA CATTATTGCC TCCATGAACT 
    CGTTCTGCTC CATCTTCACT GAACCCAGAC GAATAACTGT TATCCAATAA 
    TGGCAAATAT CCAATAATGG CAAAAATCCA ATAATTGCAA AATCTTCTCT 
    TTTTAAAATG GTTTTTTTTT GGTTTCCATT TTCCACCAAA AAATGGGAAA 
    CCCCATTTTT TAACCCCATA AAAAAAAATG TACCCCAAAA AAACCCCAAT 
    TTGGGAGCCT TCAATCGGGT CGGGGACTTT AAAAAACCCC ATAACCAGCC 
    AAACAAAGAA ACCCCGGGGG AGGGGGTTTA CCAACAATTT CCCCTTCATT 
    TTTTCATTTT TTCCCGGGCC CGTTTTT

AT1G09530.2

Model type
Protein coding
Short Description
phytochrome interacting factor 3
Curator Summary
Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.
Computational Description
phytochrome interacting factor 3 (PIF3); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 1 (TAIR:AT2G46970.1); Has 4326 Blast hits to 4310 proteins in 315 species: Archae - 0; Bacteria - 2; Metazoa - 732; Fungi - 183; Plants - 3377; Viruses - 7; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09540.1

Model type
Protein coding
Short Description
myb domain protein 61
Curator Summary
Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size.
Computational Description
myb domain protein 61 (MYB61); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 50 (TAIR:AT1G57560.1); Has 8976 Blast hits to 8269 proteins in 475 species: Archae - 0; Bacteria - 0; Metazoa - 766; Fungi - 514; Plants - 5880; Viruses - 4; Other Eukaryotes - 1812 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G34900.1

Model type
Protein coding
Short Description
xanthine dehydrogenase 2
Computational Description
xanthine dehydrogenase 2 (XDH2); FUNCTIONS IN: in 8 functions; INVOLVED IN: oxidation reduction, allantoin biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase (InterPro:IPR016208), Ferredoxin (InterPro:IPR001041), Molybdopterin dehydrogenase, FAD-binding (InterPro:IPR002346), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), FAD-binding, type 2, subdomain 1 (InterPro:IPR016167), [2Fe-2S]-binding (InterPro:IPR002888), FAD-binding, type 2 (InterPro:IPR016166), CO dehydrogenase flavoprotein, C-terminal (InterPro:IPR005107), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 (InterPro:IPR016169), Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead (InterPro:IPR000674), Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: xanthine dehydrogenase 1 (TAIR:AT4G34890.1); Has 21587 Blast hits to 20745 proteins in 1345 species: Archae - 453; Bacteria - 12993; Metazoa - 1073; Fungi - 109; Plants - 266; Viruses - 0; Other Eukaryotes - 6693 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G34910.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 35246 Blast hits to 34671 proteins in 2939 species: Archae - 524; Bacteria - 16250; Metazoa - 5646; Fungi - 4238; Plants - 2336; Viruses - 4; Other Eukaryotes - 6248 (source: NCBI BLink).
Link
InterPro Scan - TAIR