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ET13443

CSHL Arabidopsis genetrap mutant lines

Original: ET13443

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13443

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22395090 [Map]; Strand: w
      • AT3G60580.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: 46; Region: intergenic
      • AT3G60590.3 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -3138; Region: intergenic
    Flanking Genome Sequence: ET13443 - 3-prime edge 
    TGAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    GTTAGGCCAA CACGACGTGA GGCCAATACG AAAAAAAGAA TCGGCGTTAG 
    AACATGTAAA AGTAGCCTCC TTTGCATTTA AAATAAAACA TTATCTTTCT 
    TTTTTTTGTC TAGCTCGACC CCAAAAATAA TAATAGTAAA AGAAGAAAAA 
    AAAAGGATTC AACTTTTCCA AAATTTGGGA CGACCCAAAT CCCGAAAGGC 
    TGGTACCCTT ATTTCGGCTT CCTTGGAAAC CCCAAAAAAA TTTCGCTTTT 
    TTGGGTGGGG GCGGGAGAAT AAAAATTATT AATCCTCGGT TTAAAAAATT 
    GGTTTTAAGA AATTCAAGGT GGTGGTTTCC AAAAAAAATC CCCACCCCGG 
    GGAAATTTTT GGGGACCCCC AAGGGTTGGC CCCAAGGGAA AAATTTTAAA 
    ACAAATCGGA ATTTATGGGT TTTCTTTAGC ACCAACAACA AATTAATCTA 
    CTCTGGGTCC CCTTGGAGGC CCGGTTTGGT GGTAACTAAC CGGGTCCTTA 
    TAAGGACTGG TCCAAGCCCC ACCAATGGGT GGAAAGAATT AAAAACTTTC 
    CCGGGAGGCC CACAGGTGGA TCCTCCCTTT GGTGGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 268500 [Map]; Strand: c
      • AT4G00630.2 - [+] show detail - K+ efflux antiporter 2
        Distance: -469; Region: promoter
      • AT4G00630.1 - [+] show detail - K+ efflux antiporter 2
        Distance: -450; Region: promoter
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: -526; Region: promoter
    Flanking Genome Sequence: ET13443 - 5-prime edge 
    TACTGTCTTA CTCTACCTGC ACTAATGGGG GTGATGGTGT GCTCTTTTTA 
    GTCTTCAAAC ACGATAATCC CATGATAAAA TCCTTGTGTA CTTGGTTTAA 
    GTTGTGACTT GTGAGTACTT TTAGTTTTAG GTGGGAAAGA AATGAAAACA 
    TTGTGGGCTG ACGGTACTAG GTAAGCCCAA TAAGGAAAAC GACTCTACGC 
    AATCAGAGAA GGTCGCCAAG CGTACGGTCG TTCCCTCATC AAAGAACAAC 
    GTCGCTCGCT TTTTTATTAA TAATAGTTCA CAAATATTAA AACACATTTG 
    GAAAATGACT TGGTCACGCG CACCCAAAGG CAGTGCAAAA CTAAACGAGC 
    CACCTATCAG TAAAACGTAG CCGTTGATTC GAACCACGTG TATATTGCAC 
    GCACCACATG CGAGTACGAG TAAGAGAGTT GGTGGTATAT TCACGGCATA 
    TTATATGTGC ACGAATTGAA TCTCTCTAAG CACGAGAGGG CATTTTCGTA 
    ACTTTCTTAT AAAAAATCCT ACCACGAGTG ATTGGGCAAA AAAAACTGAA 
    AGAGGAAAGA GAGAGTTGGA CGGAAAATCT GAAGACCGCC GAGAAAAATA 
    CTGTTGAAAC GGAACTCTCT TACGTTTTTT CTCAGGAGAT ACGTTTCATC 
    TTCCTCTCAG TAACTACTCG AT

AT3G60580.1

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Computational Description
C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G45120.1); Has 2639 Blast hits to 2349 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 1624; Fungi - 13; Plants - 935; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60590.3

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00630.1

Model type
Protein coding
Short Description
K+ efflux antiporter 2
Curator Summary
member of Putative potassium transporter family
Computational Description
K+ efflux antiporter 2 (KEA2); FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport, metabolic process, transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153), K+/H+ exchanger (InterPro:IPR004771), NAD(P)-binding domain (InterPro:IPR016040), Regulator of K+ conductance, N-terminal (InterPro:IPR003148); BEST Arabidopsis thaliana protein match is: K+ efflux antiporter 1 (TAIR:AT1G01790.1); Has 34304 Blast hits to 27699 proteins in 2887 species: Archae - 928; Bacteria - 15112; Metazoa - 9897; Fungi - 1524; Plants - 1371; Viruses - 95; Other Eukaryotes - 5377 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00630.2

Model type
Protein coding
Short Description
K+ efflux antiporter 2
Curator Summary
member of Putative potassium transporter family
Computational Description
K+ efflux antiporter 2 (KEA2); FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport, metabolic process, transmembrane transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K+/H+ exchanger (InterPro:IPR004771), Cation/H+ exchanger (InterPro:IPR006153), NAD(P)-binding domain (InterPro:IPR016040), Regulator of K+ conductance, N-terminal (InterPro:IPR003148); BEST Arabidopsis thaliana protein match is: K+ efflux antiporter 1 (TAIR:AT1G01790.1).
Link
InterPro Scan - TAIR

AT4G00650.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Curator Summary
Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.
Computational Description
FRIGIDA (FRI); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 841 Blast hits to 841 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR