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ET13445

CSHL Arabidopsis genetrap mutant lines

Original: ET13445

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13445

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 122099 [Map]; Strand: c
      • AT2G01210.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: -253; Region: promoter
    Flanking Genome Sequence: ET13445 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACTT 
    AAGCTTTATA CAGTTTTGAA TCAATCATAA AAACTTTATC AAAAATGTTA 
    CAAAAGGTTT TACTTTTAGC TTTTTTGTAG AGCTTTTTTA ATACAGTTTC 
    TTCTAACAGT TTTGCACTAT TCCGATAAAG CTAATAGCTC GTAAAAAACA 
    ACTTGTCTCT GTAATCTCTC CTATATACAA AATGTTACAA ATGCAGATAT 
    CTTTATTCAA ATAGTTACAT CTTTTAATAC CTTTTGTCAT GATTGTTGTT 
    TTATTCCGAA AAGTAATATA TTGGGGTCCT TTGATTGATC TGTCAAGTGT 
    CAATGTAGGT AACATTTACA GTGTTTGTCC TTTTCTATTA ATCTATCTTG 
    TCAATATATT ACTACTACAG CAGTATCATT CATTTTTTAT TTCTTAGATG 
    ATGTTGCTCT AGCACGAAAC TCCATAAAAT ACCAAGTGAT GCATATTAAT 
    AGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26878162 [Map]; Strand: w
      • AT5G67370.1 - [+] show detail - Protein of unknown function (DUF1230)
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: ET13445 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAAC 
    ACAACAATGT TCCTTATTCA ATACTGCAGA AAGCAAACAA AACAACAAAA 
    ATCAGGAAAT TTATATGATT TTTAGGTGAA GCCAGTGATC AAGATGCTCA 
    AACAAACATT AATCGGAACA GGAGCTTTAC TCGTTTCAGC ATTCGTGCTA 
    TTCGTTTTCG CAACACCAGT CGAGGATTTC TTTAAAACCA CTCTAGGATC 
    TACAGAAAAC CAACCAGAAG TTTCCATTTC AAGAACCAGC AACAAGTTCA 
    ATATAAGGTA AGGAGATGGA TAAGTATTTT TGGTATTTAA GAAACAAAAA 
    AAAAAACTCT TCTCTTTCCC CTATAAAAAT TTGCAAAAAA AAACAATTGT 
    TTCAACTCCC CGAAAATGTT GGAACTGACA ATAATCTGGA ACAACCCGCG 
    GTTGAGGCCC TTAATGAAAA ACCTGTCTAT TGCAAAAACC GGAACTCCCG 
    GGCATAACCC GGGGGCCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 121984 [Map]; Strand: c
      • AT2G01210.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: -138; Region: promoter
    Flanking Genome Sequence: ET13445 - 5-prime edge 
    CTGCTACCAT TCAAACCCAT TAGATTAGTG GTCAAATTAG CGTATGGATT 
    ACTTCGCCAT GGCCTTCTCT TTTCTCCAAC TTTCACCTCT TTCTTTGGTC 
    ATTTCTTTTT TTTTGTTAAT TCTCTTCTCC CAATGCAAAA ACAGAGCTCT 
    CTCTCTCTTT CTCTCTACTT TTTGTATTCT TTCTTTCTCC TTTTTCTTCC 
    ACGAGAGTAT CTTTTTCACT TTACTCTCAC TCCATCAATA TCACACTCTT 
    CTTGCTACTA TCTCTCTTTG CTTTGTACAA AGCCAACACT CGTCTTTTTG 
    TTCTAATTTG CATCTGATAA TGTTGGCCTC GCTGATCATC TTCGTTGCTC 
    TTCTCTGCAA TGGGACTGTC ATAAGTGGCT TAAACGACGA AGGCTTTGCG 
    CTCTTAACGT TTAAACAAAG CGTTCACGAT GATCCTACAG GTTCTCTTAA 
    CAATTGGAAC TCATCAGACG AGAACGCCTG TTCGTGGAAC GGTGTAACTT 
    GCAAAGAACT CAGGGTGGTG TCTCTAAGCA TTCCAAGGAA GAATCTTTAC 
    GGTTCTCTCC CTTCGTCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26878281 [Map]; Strand: w
      • AT5G67370.1 - [+] show detail - Protein of unknown function (DUF1230)
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: ET13445 - 5-prime edge 
    AACACCTGAA AACACAAATG CAAGGGCACA GCAATTAACC AGTTGCTTAG 
    TTCTTCGATT CTGCTAGTCA ATCAGGAGTC AAAAATGCAT TTTGACCACA 
    TATGTTCATC TATAGTGTCA ATAATACAAC ATGCTAAGAA TTCAGGAACC 
    GGTGATAACT TGGCAGTGCT TCGATCCATT GATCTACTAG CTTTTTGCAA 
    TGCTTTAGAA TACATTTTGC TTTGCATACT GAGGTACATT CACAACAAGC 
    TCAGTTATGG GAAACTATCA AAATCACAAC

AT2G01210.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: chloroplast stroma, chloroplast, plasma membrane, plant-type cell wall; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G25320.1); Has 133812 Blast hits to 98087 proteins in 4104 species: Archae - 103; Bacteria - 11207; Metazoa - 34549; Fungi - 6957; Plants - 66297; Viruses - 188; Other Eukaryotes - 14511 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G67370.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1230)
Computational Description
Protein of unknown function (DUF1230); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1230 (InterPro:IPR009631); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1230) (TAIR:AT5G11840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR