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ET13449

CSHL Arabidopsis genetrap mutant lines

Original: ET13449

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13449

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 8948 [Map]; Strand: c
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon4 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: ET13449 - 5-prime edge 
    TCCTACTTTC TCCCTGGCTG GAGGTGATCA ATTTTTTACA CCAGAGAAAG 
    ATGAAAGGTT AAGTGATATT GCTATAAACA ATGGAAGTGC CAACAGAGGT 
    TATATTGCTC ATGAAGAAAA GACAAGCAAC AAACATACGC CAAATAGTTT 
    TGTATCTCCT CTTTGGTCAT CTTCAAAGCA ATTTAGTTCA GTCAACTTGG 
    AGAACCTAGC TTCAGGGGGT AATTTGATCA AGAAATTTGA TGCGGCTGTT 
    GATGAGACCG ATTGTGCTCT GAATGCTACA CATGGACTAT CAAATAACAG 
    GTCTTTGGCA TCAGATATGG CAGTGAATAA TTCCAAGGTA AACGGTTTCA 
    TTCCAAGAGG TAGGCAACCT GGAAGGCCTG CTGATCAGCC ACTTGTTGAT 
    ATAACAAATC GCAGAGATAC AGCTTATGCA TACAATAAAC AAGACAGTAC 
    CCAAAAGAAA AGGCTGGGAA AGACAGTCTC CGTTTCTCCT TTCAAAAGGC 
    CAAGGATTTC ATCCTTTAAA ACTCCTTCAA AGAAACATGC TCTGCAAGCT 
    TCAAGTGGTA ATATATATGA TTAATTTTTT TAAGAATTTT TTATGGTAAT 
    CTAATTGGTT GGTTCTCAGG TTTATAGTTT TGGTGTCCTG TCTATTATCA 
    GGT

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR