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ET13451

CSHL Arabidopsis genetrap mutant lines

Original: ET13451

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13451

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9782270 [Map]; Strand: w
      • AT4G17560.1 - [+] show detail - Ribosomal protein L19 family protein
        Distance: 87; Region: intergenic
      • AT4G17565.1 - [+] show detail - F-box family protein with a domain of unknown function (DUF295)
        Distance: 238; Region: intergenic
    Flanking Genome Sequence: ET13451 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TATATGTGAC 
    CCAAAAAAAG AAAAAGAAAA ACAAATCATA AGGGAATTCA TCGACCACAT 
    CCTAATACAG TAATATCTAT GCTGAATGAT TCATAGAGAT TAGGGTAATT 
    TAATAATAAA AAGTTGGGTT CCACCTTCAC AAGATCAAAA TTCAAGATTC 
    GAATAGTTGA GACGAAGTCC CAAAAGAAAT AAGACGAGAA CATGTCTTCT 
    GTTTTTGTTC CTGAAGACCC TCAAGAGTCA AGACACACCA AACAACATAT 
    GCACAGAACA CAGACTCATT CATACATATT TTCTATTAAA GTATGGACTT 
    TAGGTCATCC TAAGCCATAT ATCATTCATT ATCAAACAAG GAACAGGTCT 
    ACATCCATCA ACCGGAAGTT CAACTAATCT TAATTTACTT TCTCAGAAAA 
    TGTGCAGGGA ATGACTTACA GGCTTAAAAA AAAGAAAGAA AGAAACAATT 
    CTTACAAAAA AAGAGCACAA TGCGGAAGAT TACTACCTCT GGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9782329 [Map]; Strand: w
      • AT4G17560.1 - [+] show detail - Ribosomal protein L19 family protein
        Distance: 146; Region: intergenic
      • AT4G17565.1 - [+] show detail - F-box family protein with a domain of unknown function (DUF295)
        Distance: 179; Region: intergenic
    Flanking Genome Sequence: ET13451 - 5-prime edge 
    CCTACTTTCT CCCTGGTCAC ATAATGAGAT TCGAATCATA GTGTGCCAAA 
    ACCTCTATCA TCGAAGTTCT AACCAAACTA TTACTACTGG TAACAAATAA 
    GATAATTGAA ACATGTAACA CCTTGAAGTC ATGAAGTCTA AAACATATGC 
    ATAATACAAA GAAACTAACC ATCAAAAGAC TAAGTAAAAG CAAAGGTATT 
    AATAATTTAA AAACAAAAAA AAAAGGGAAC AAGAAGCAAA AACTTGTCCA 
    ATTAACGGGG GAAACCAGGA AAAAACCTTC GAAAATCAAA AAAAAGCTTG 
    GAGGAAAAAA CGCTTGGGGG AAAAGGTTCC AGGGGGCCGG TGGGGAAATC 
    ATAAACAAAT CTACATTCGG GATCCGTAAA GGGGGGGTGG AGGCCACTGA 
    AATAAAGGGA GTTTTTCTGG ATCCCGGGAA TATCTTTAGC GACAACAGGG 
    ATACCCAGGC CCAAAATTAT AGCCGCATCA CCTAAAAAAT CGACTTTTAC 
    CCATCTCGGC GTCAGAGGAT TTAACTCGAA GAGGCGAAAA CGCCATCTGG 
    AAAGGCCGAA GAAGGGCATA ATTTTTACCA CCACAACTTC TCCAAAAAGG 
    ACATCCCCAT C

AT4G17560.1

Model type
Protein coding
Short Description
Ribosomal protein L19 family protein
Computational Description
Ribosomal protein L19 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19 (InterPro:IPR001857); BEST Arabidopsis thaliana protein match is: Ribosomal protein L19 family protein (TAIR:AT5G47190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G17565.1

Model type
Protein coding
Short Description
F-box family protein with a domain of unknown function (DUF295)
Computational Description
CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT2G05970.1); Has 496 Blast hits to 483 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 496; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR