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Mutant Lines
ET13452

ET13452

CSHL Arabidopsis genetrap mutant lines

Original: ET13452

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13452

Determination of insertion point(s)

3 prime edge [+] show sequence

Not mapped

ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
TGTAGTACAT ATAGCTTGAT TTAGCTTCCC AATGGAGTAA TCACAAATCG 
TGTAGTACAT TACAAAAAAA AAAACCGAAA AAAAAAAAAC TTTTAAAATT 
GGGGACCCCA AAACCCCCTT TTGGGCCTTT TTTTAAAAAA TTTTAAAAAA 
TGGGCCTTTT TCCTTTTGGC CCCTTTTCCT TTTTTTCGAA AGCAACCCCC 
CCAAAAAAGG TTTTTGGCCC TTTTCCGGGG GAAGGGGAAA AAAAAAAAGG 
TTTCCCCCAC CCAAAAAACC CCTCCCCCCT TTTCCCTTTT TTTTCCTTTT 
TCCCCTAAAA AAATAACCCA AAATTTTTTT TTCCCCCAAA AATTCAAAAC 
CCCCCCTCAA AGGTTTTTTT GGGGCCCGGA CCCCCCCCCC CACCAAATTT 
TTTC

5 prime edge [+] show sequence

Chromosome: 5; Position: 18082173 [Map]; Strand: c
- AT5G44790.1 - [+] show detail - copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting AT...
  Distance: -2185; Region: intergenic
- AT5G44800.1 - [+] show detail - chromatin remodeling 4
  Distance: 1246; Region: intergenic

CACTTTATCC CTGGTACTAC ATATATTTTA CCGTCACTCT TTTGAAAGCT 
ATATGTACTA TACAAATTAT GTTTTAAGGA ACCATGAACT GTTTTTAAGA 
TTACTTGAAG TCTACGTTTA ATGTCTTGAC AACAAACAAA GAAAAAAAGA 
AAGGAAAAAG ACTAATAGTC TAATACATTT AGGTCAAAGC TTATCTCTTG 
ATCTTTCTTA AGTGGAAGGT TCCTATTGTT ATCTTTGCCT TTGTTTTTCT 
TGTTTTTTAT TTGTTCGTAG AAAGCATAAT GAATGATTCA GACAGAGAGA 
AAGTATATTT GGTGTATTAG CTTTTGATAA GTGGAGTGGA AGTCACATTC 
CAACAAAAGA AAAAGTAAAC TAACTATTCC AATGTTTCAG AATCTTGGCT 
CTCTGTAATA GTTCCGAGTT TATATCATAC CAAAAA

AT5G44790.1

Model type: Protein coding
Short Description: copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1)
Curator Summary: ATP dependent copper transporter vital for ethylene response pathway
Computational Description: RESPONSIVE-TO-ANTAGONIST 1 (RAN1); CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), Copper ion-binding (InterPro:IPR006122), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: heavy metal atpase 5 (TAIR:AT1G63440.1); Has 47831 Blast hits to 34622 proteins in 3461 species: Archae - 1084; Bacteria - 31583; Metazoa - 5562; Fungi - 2713; Plants - 1975; Viruses - 3; Other Eukaryotes - 4911 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G44800.1

Model type: Protein coding
Short Description: chromatin remodeling 4
Computational Description: chromatin remodeling 4 (CHR4); FUNCTIONS IN: in 6 functions; INVOLVED IN: chromatin assembly or disassembly, regulation of transcription; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Homeodomain-related (InterPro:IPR012287), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 35726 Blast hits to 27895 proteins in 2283 species: Archae - 135; Bacteria - 6476; Metazoa - 12546; Fungi - 6155; Plants - 3074; Viruses - 328; Other Eukaryotes - 7012 (source: NCBI BLink).
Link: InterPro Scan - TAIR