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ET13454

CSHL Arabidopsis genetrap mutant lines

Original: ET13454

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13454

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10895571 [Map]; Strand: c
      • AT4G20160.1 - [+] show detail - LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: ...
        Distance: 600; Region: intergenic
      • AT4G20170.1 - [+] show detail - Domain of unknown function (DUF23)
        Distance: -1108; Region: intergenic
    Flanking Genome Sequence: ET13454 - 3-prime edge 
    GTTTCATCCC TAAGAAGCCA AGCAAAAAGA CACGTCTGCG CCATGGGGCT 
    TACAGATTTT GGAAGCTTAA AACGAAACTG GGTAATTTTA AAAAAGGATA 
    CAAAACGATA TTAACAAACA AATTATAGAA AACCATATTA AAAAGCCATG 
    GAAATCCATT TTCTATACCT GGAATGGCAC CCTCAGAAAA CTCGAAATTA 
    TACGCCATCA AATTTAGAAA CTTACATGGG TAAAGCAAAC TCATTAAATT 
    GGTACGACAA TGGCAAAAAA AAAAAAAACC CATCTTTTGG GAAAATAGGG 
    GGGGAAACCC AAAACTTTTC CTTAGGGGGG GGGGTTTTAG GGGGGGGCCC 
    GGCAAAAAAT TTCCGGGGGG GGGGGGAACC AGGGCTGGGT TTGGGCCCCG 
    GGGAACTTTG GGAAAAAAAA AAAAAGGGGG GGGCCCATTT TTTAAAATTT 
    CCGGGGCCAT TTAAAATTTG G

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10895481 [Map]; Strand: c
      • AT4G20160.1 - [+] show detail - LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: ...
        Distance: 510; Region: intergenic
      • AT4G20170.1 - [+] show detail - Domain of unknown function (DUF23)
        Distance: -1198; Region: intergenic
    Flanking Genome Sequence: ET13454 - 5-prime edge 
    TTCATCCTAC TTTCTCTCTC TCGTACTACG TTTCAAACTT TCAATTGCCT 
    TTTCTTCAAT TTCTTTTAAC ATAAAAATCA AATTCTTTAT AATTTTTTTT 
    TAACTTTTCC AAAGCTCAAA ACGGTCGAAA AAGTATTTTC TTACATCCAT 
    AGCCTCCAAA TACTACAATG TTTATTCATA TCACTCGACA AACCAAGATT 
    CATTATTATC CTCTTTAATG TACTTTTAGC TTTTGCTCAA CAAATTGAAT 
    TTACTACAAA GTAATGGTTT CACTTCATAG AAGAATAGGA GAATAATAAA 
    GTCTTTAGAA GTCGGCATAA CACGTGAAGA CAAACAAAAT GTTTATTATG 
    TATATTCAAA TGTGACACAT TTTCAAATCA ATGGAGAAAC TAGCAATGTT 
    TTGTGGTTTC TTGGGTCCTA AGAATCAAGA AAAGCCCTCA CAACGTCAAC 
    AATTGGAGCC ATACATATCG GACATTTCTT ACTGCTCCAT TGCAATTCAT 
    GAGCACATTT CAGACATGTG CACATATGTC CACACCTGTT AAAAGGAAGA 
    CCAAGACCGC CAGTTATTAT TTCAGCGTTT CCGATTTGAA GTTGCGATAT 
    ATCAAACAGA AGTACCTATA CAGGAGCGAA TCA

AT4G20160.1

Model type
Protein coding
Computational Description
LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G30860.1); Has 64917 Blast hits to 39974 proteins in 1949 species: Archae - 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788; Plants - 3193; Viruses - 275; Other Eukaryotes - 21353 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20170.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF23)
Computational Description
Domain of unknown function (DUF23); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT5G44670.1); Has 199 Blast hits to 199 proteins in 36 species: Archae - 0; Bacteria - 27; Metazoa - 44; Fungi - 2; Plants - 116; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR