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ET13456

CSHL Arabidopsis genetrap mutant lines

Original: ET13456

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13456

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 3218797 [Map]; Strand: w
      • AT2G07635.1 - [+] show detail - transposable element gene
        Distance: 1234; Region: intergenic
      • AT2G07640.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -1942; Region: intergenic
    Flanking Genome Sequence: ET13456 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTACTTACAA CAGTACTAAG 
    GTCATCAAGA AGTTAGTAGT ACAGGGCTAG CAACCTTTTA TTTATTTTTT 
    ATTTTTATTA GGGAACTTCA AATCCCCATA GCAAAAGAGA TCATTGACTC 
    TTTCCTAATT GACATTTAGC ACTAATCTGA AACAGGAGTA GAAGTTTAGG 
    CAGAAGTTTA TAAAGGGGAC AATTAACTTG TATCCTAAAT CATAGAAAAC 
    AAGTGCGACA TATCTTGGAA TTGCGTGAAG TTACCAAAAC ATAGAAAACA 
    AATGTGACAT ATCCTGGAAT TGAATTTTAA CATAGCCTTA ACAGGTACTG 
    GGTATTAATT TCATTACACA TAACTATTAT ACAAAAGTCC TACACTATTT 
    AAAATGATGA AATTTAGTGT TTCTTGGTTT TTGATAAACG AACTCTTTAA 
    TTGTGATCTA GTTACCGAGA GTGTTTTAAT AAAATTGTAC TTCAAAACTA 
    TTTTGTACAG AATTAATCAA TTTAGTTACC AAGAGTGGTT TGAAAGTTAA 
    CCATAAGATA ACATATATAT TTCCTATGTC CCATTTTACC AGATTTTTGG 
    CTTAAAGCAG GCATATGAAA ACCTTTTTCT TATACCAAAA TATTATTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 3218610 [Map]; Strand: w
      • AT2G07635.1 - [+] show detail - transposable element gene
        Distance: 1047; Region: intergenic
      • AT2G07640.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -2129; Region: intergenic
    Flanking Genome Sequence: ET13456 - 5-prime edge 
    TCATCCTACT TTCTCCCTGG TTGTAAGCAT TGCCTACCTC ATTTTGGTCG 
    TGTGGATCCA TTGTTTCTTA CCAGTTCAGA TTACTACTAC TCGTTTATCG 
    AAAAGTTTAT TACTAGCTCG CACTCTCATT CACTCTTGTT TCTTTATTGG 
    TAACACTTTA GCGATTCGTT AATAAATCTT GTTTTAATTC ATCCTTCTTC 
    CATGATCGTA TTTGCTTTGA GATTGAATTG ATGACTTGAC TCAAAAATAT 
    GTTATGCTTC GCTGCTTTTA TATTTTTTTT TTGGCATGAA ACCATGTAAT 
    AGGTAAATTA TGTTTCATGT ATAACCTAAA TTTCCATTTT AATAAAACAA 
    TATATATCCT ATTATATTAT TTGGGAAGAA CATTTTAAAT GTAACTTTAT 
    TTTTTGAAAG TAATTACATA GGTATGCCAT TAAAAATAAA ATTTAAAGAG 
    TAAATTATTT CTCCCCC

AT2G07635.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 2.6e-89 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)
Link
InterPro Scan - TAIR

AT2G07640.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase-reductase B (TAIR:AT3G12800.1); Has 39750 Blast hits to 39728 proteins in 2896 species: Archae - 347; Bacteria - 28316; Metazoa - 821; Fungi - 1588; Plants - 1054; Viruses - 2; Other Eukaryotes - 7622 (source: NCBI BLink).
Link
InterPro Scan - TAIR