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ET13458

CSHL Arabidopsis genetrap mutant lines

Original: ET13458

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13458

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 228068 [Map]; Strand: w
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -1876; Region: intergenic
      • AT2G01505.1 - [+] show detail - CLAVATA3/ESR-RELATED 16
        Distance: 677; Region: intergenic
    Flanking Genome Sequence: ET13458 - 3-prime edge
    GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA CTTACACGTA 
    GTATTGTTAA TTGTTGAATT TGGACATTGA AAAAGATTAT GAATCAAAGA
    TTCGGAACTT CCAAGATTTA TATCATAAAA AGCCTACAAA TGCAATTATT
    AGAAAACTAA ATCTAACATA CTCATTTTTA GTAAATCAAA GTATTTTCTT
    TTTGTTAGTA GTAAATATAA TCAATGTATA GTTTGATTAA TCAAAATTAC
    ATATTCTGAT TGACTACATC TAATCTATTG TGAAAACAAG TCCATACACA
    AAGATATAAA TTAAAAAAAC GTACAATAAA CTTATGCGAA AAATCTGCTA
    AATGATTATT GTGACGTGTG GAAAAAGATA TTATTTAATA GAGTAGGCCA
    TTTAGCTTTA ATAAAATTTG TATCATTTGA ATGTGTTTGA ACTTAATGCA
    TACGGTTCTC TCGATGGTGA TGCCTCCCCT CTATATTTTT TTCTCTCTTT
    TTTGAGTATT ATTTACATAC GTACAAACAT AAGTAATGCT CATATATGAA
    TACTTGTTTA CTACTATTCA CTCACGGATT AAAATTCTAT TTTGTTAAGG
    TATATGAGTC TTTAAATACA GAATTTTCCC ATTATACACA ACCAAATTAA
    TATTTGACCA AATATATGCA AACTTCGATA CTTGTCCCTG TTTTTTTTTA
    TTACCTTAAC TAATATACAT TGATTATAAA CAACAAACAC CTCAAAATGT
    ATACCTAATT AGATCAAAAT AAA
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 228135 [Map]; Strand: w
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -1943; Region: intergenic
      • AT2G01505.1 - [+] show detail - CLAVATA3/ESR-RELATED 16
        Distance: 610; Region: intergenic
    Flanking Genome Sequence: ET13458 - 5-prime edge
    CCTACTTTCT CCCTGAGCTA CAAATATAGT TGAAGTAGTG ACCTTGAATA 
    CTTTCAAGAA CCACTAGACC ACCACATATT TTTGGATCCA TAACTTTTGA
    TCGATTTTAT ATATTGTTAG GAACTTTTAG GGCACCTACT CAGCATGTAT
    ATGATGATTA GGCTGAATTT ACATCCATGG CCGTTTTAAA AAGAAAGATC
    GGATGCTTAA TGCACGACCT AAGAAGTATT TTTCACCTAG AGTCTACCAT
    ATTCTAGCTA GCTTTATAAT ATGTAGGAAA AATCGAAAAT GCATGAGTTT
    CACCCAATTT CAAGTCTCTG CTTCTCCCTT TGTCATGCTC GAAGGAGCAG
    TCAACACCTT CCATGTTCAT GTATTTATAA ATTTATCATT TAACAATACA
    CAATTTTGGA CCCATTCAAC ATTGATTTTA ATAACTTATA TGTTATATGG
    TTAAATAACA ATAATTAATC AGTTTAACAC AAAAAGACAA CCTTCTTTTT
    CTGCATAGAA CATGATCTTC GAAGAAATCC ATGCATTCGA ATCTTCAACC
    ATTTTTTTTT TCTTGCTTAC AATATTAGTA TATAAAAA

AT2G01500.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.
Computational Description
PRETTY FEW SEEDS 2 (PFS2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: primary endosperm nucleus, nucleus; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 1 (TAIR:AT3G18010.1); Has 564 Blast hits to 564 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01505.1

Model type
Protein coding
Short Description
CLAVATA3/ESR-RELATED 16
Curator Summary
Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.
Computational Description
CLAVATA3/ESR-RELATED 16 (CLE16); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR