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ET13464

CSHL Arabidopsis genetrap mutant lines

Original: ET13464

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13464

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 19699 [Map]; Strand: w
      • AT4G00050.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: ET13464 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTTTAG ACCCAAGTTG 
    TATATCTATA TATAGAAAAA GGGTCAACCT GAGTAGAGCA TGCAAGAAAG 
    GCAGACATAG GATCGGGGAT GAGAGGAGAC TGAAATCGAG AGTCATTGGA 
    AGAAGCATCC CACGATGGAC AATTCATGGG CAAAAATGGG TTTGGCATCA 
    TGTTGGCATG GATATTAGGA GCGCTTGCAG CAGCTCGGTT CATAGAATTA 
    AGGTCGAGGA GACCGAGACC GGGCATCCCC ATGCCCATCC CTAAACCCAT 
    GGGATTGGAC ATGAGAGACA TTTGTAGTTG TTGTTGTTGC TGCATGGCCA 
    TAGGAAGCAT CATAGAAGGC ATATTCATTC TGCTCATCAT GCTCACTTGT 
    GCTTGAAGTT GCTTCAAATA CTCTATCACT TCATCCAACA TAGATGCTTT 
    ATCCGTCTAT AGTTCCAAAA TTAACGATTT ATATATCAAG CCTCTTTGGT 
    ATCTACTATA ATTAACCAAA CCAATGTTAC GGAGCATGTG TGTAATGTAG 
    ATTGTGTTGA TTTTTGAGTC GACAGCCACA AGGCATATAA TAATTAAAGG 
    TGTATATGAA TGGACAACCC GGACCAAGTA ATAAAGTGAT GTAAAAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 19864 [Map]; Strand: w
      • AT4G00050.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon6 (3UTR)
    Flanking Genome Sequence: ET13464 - 5-prime edge 
    CTACATTATA TCATCAAATG CAACAACAAC TTCCTCCTCC TTCGAATCCA 
    AAATGATTAT TACTCAAACA CCTCTATATA GTTTACGTCT ATATATGTGT 
    TAGTCACATA CATACATATA TATATTCCAT CATAATTATT TATTTATATG 
    TATAGGCTTC TCATGAATTA TGATATTATA CGTATTACGT ACTTTAAAAA 
    TATGTGGTCG TAATTGGATA GAGAAAAATA AATAATGGTT ATGTTTGAGT 
    GAATTAGTAA CATCACTCCA CGTCTCCACC ACATCCACAA ATGAACTCCA 
    A

AT4G00050.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
unfertilized embryo sac 10 (UNE10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome-interacting factor7 (TAIR:AT5G61270.1); Has 3766 Blast hits to 3760 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 50; Plants - 3342; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR