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ET13466

CSHL Arabidopsis genetrap mutant lines

Original: ET13466

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13466

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 9673099 [Map]; Strand: w
      • AT3G26420.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-l...
        Distance: 0; Region: intron3 (3UTR)
      • AT3G26430.1 - [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
        Distance: 0; Region: intron3 (5UTR)
    Flanking Genome Sequence: ET13466 - 5-prime edge 
    CCGCCCCAGA GCTGGTGGTT TCCACTAGAA TTCTACTCCA AAGGGTATGT 
    ATGCATTCTG TTATTTTAAC TTTTTCTATT GTATCCCTTC AAAGTTAAGT 
    TCTGGTAAGA CTTTTGTTGA AGTCGCTCTA TATCTTCTTT TGCAGTTAAA 
    GAAGTTGAAG GTTTCTGCTT TCATCTCACT

AT3G26420.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain
Curator Summary
Zinc finger-containing glycine-rich RNA-binding protein. Cold-inducible. Contributes to the enhancement of freezing tolerance.
Computational Description
ATRZ-1A; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (TAIR:AT5G04280.1); Has 19846 Blast hits to 11644 proteins in 926 species: Archae - 13; Bacteria - 5482; Metazoa - 6891; Fungi - 1262; Plants - 3241; Viruses - 222; Other Eukaryotes - 2735 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G26430.1

Model type
Protein coding
Short Description
GDSL-like Lipase/Acylhydrolase superfamily protein
Computational Description
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: alpha-fucosidase 1 (TAIR:AT1G67830.1); Has 3218 Blast hits to 3172 proteins in 104 species: Archae - 0; Bacteria - 74; Metazoa - 0; Fungi - 6; Plants - 3136; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR