Home
Mutant Lines
ET13470

ET13470

CSHL Arabidopsis genetrap mutant lines

Original: ET13470

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13470

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 1530331 [Map]; Strand: c
  - AT4G03450.1 - [+] show detail - Ankyrin repeat family protein
    Distance: 0; Region: intron2 (CDS)
Flanking Genome Sequence: ET13470 - 3-prime edge
```
ATTCTCTGAT ATCCAAATAA GATCAACAAA TGGAAATAAG AGAAAAGGCT 
TTATATTGGA TCAAAAACAA AATAACGTAC ATACAGATAT ACTTCTCCAA 
AGACGGAATA GGACTGCACA TTCTACTCCG CTATATCCAG AGCACTCAAG 
CCATCTTTGT TA
```

5 prime edge [+] show sequence

Chromosome: 3; Position: 9672972 [Map]; Strand: w
- AT3G26420.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-l...
  Distance: 0; Region: exon3 (CDS)
- AT3G26430.1 - [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
  Distance: 0; Region: exon3 (5UTR)

CTTTCTCCCT GGGTGGAGGT AGTCGCTATG GACCTGATCG CAGTGGTGAA 
CGCGCTGGAG GACGCAGCCG GGATGGTGGC AGCCGTGGAG CTCCAGGAGG 
TGAGAGGCAC AGTCGTGCTC CATATGACCG CCCCAGAGCT GGTGGTTTCC 
ACTAGAATTC TACTCCAAAG GGTATGTATG CATTCTGTTA TTTTAACTTT 
TTCTATTGTA TCCCTTCAAA GTTAAGTTCT GGTAAGACTT TTGTTGAAGT 
CGCTCTATAT CTTCTTTTGC AGTTAAAGAA GTTGAAGGTT TCTGCTTTCA 
GCTCGTGTCA AGTCAAAGTT ACGCTTGATG GTCTATTTTC TTCAATGTAT 
TTGGATAGCT CGAGAAAGAA GATGTGTTCT CTATTTTGGC CCTAAACTCA 
AGAGTCGACT ATGTTCCTAA AGTGCTCTCT CTCCTTTTGA TATGTTGATC 
CCTATGGAAA CCTTGTGCTT GGTTGGTTTG

AT3G26420.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain
Curator Summary: Zinc finger-containing glycine-rich RNA-binding protein. Cold-inducible. Contributes to the enhancement of freezing tolerance.
Computational Description: ATRZ-1A; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (TAIR:AT5G04280.1); Has 19846 Blast hits to 11644 proteins in 926 species: Archae - 13; Bacteria - 5482; Metazoa - 6891; Fungi - 1262; Plants - 3241; Viruses - 222; Other Eukaryotes - 2735 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G26430.1

Model type: Protein coding
Short Description: GDSL-like Lipase/Acylhydrolase superfamily protein
Computational Description: GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: alpha-fucosidase 1 (TAIR:AT1G67830.1); Has 3218 Blast hits to 3172 proteins in 104 species: Archae - 0; Bacteria - 74; Metazoa - 0; Fungi - 6; Plants - 3136; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G03450.1

Model type: Protein coding
Short Description: Ankyrin repeat family protein
Computational Description: Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03440.1); Has 22492 Blast hits to 11630 proteins in 488 species: Archae - 24; Bacteria - 1675; Metazoa - 12211; Fungi - 1719; Plants - 2554; Viruses - 43; Other Eukaryotes - 4266 (source: NCBI BLink).
Link: InterPro Scan - TAIR