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ET13480

CSHL Arabidopsis genetrap mutant lines

Original: ET13480

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13480

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8961551 [Map]; Strand: w
      • AT1G25510.1 - [+] show detail - Eukaryotic aspartyl protease family protein
        Distance: -703; Region: promoter
      • AT1G25520.1 - [+] show detail - Uncharacterized protein family (UPF0016)
        Distance: -574; Region: promoter
    Flanking Genome Sequence: ET13480 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TAGATTTAGG 
    CAGCAAGGTT AATGAGTTAA TGTAGTAGAC TTGGGGTATG AAATGGCCCA 
    AACATCCAAG TTAAAAGCCT AGATAAGAGT TACCCACAGG GCCATGAGGG 
    ACCATAAATT CACCATTTTT AAGTCAGCAA ATTCCTCCAC ATTGTTAATA 
    CCTTAACATG ATATGCATAT GTATGTTTTT TTGTTGTTGT CAGATTGCGT 
    ATGTATGTAT TGGTTTACAG TTATAGCTTT CTTTTTAGGT TAATTGTTTA 
    GTATCATATA GCTTTATAGA CATAGGTCTG GATAAAATGA AATAAGTGAG 
    CTGTTATAAT TTGAATGAAA GTCATCATTA ACAAAGCTAA GCTCATAGCC 
    AAATAAAATT TGTCAAAGTG CGAAGATGTG AAACACTCAA AAGTGGCTGA 
    CTTAATAAAA TCTAAAACAA CAATCTCCAC ACTAACCGCA TTGAGATCAT 
    AAAACAAGTT TATTTAAATC CTCACACTTA AAGAGGATGA AGAAACCTCC 
    TCTTCCTCTT TAACCATTTA TCTAATCTTT GGATTAATTC TTCAAGAAGA 
    GATACTTACT TATATAAATC TCCTCGAAAT CTGCAAACCC CCAAAACACA 
    GCTTGTCTTT GTTTTAATTA AAAGAAGCTT TTGTCTCATT TTCCCTTCCC 
    CACAAACACA CTTTTGTCTT CTCTTTAATA ACCTCATTCC TTCATCTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8961609 [Map]; Strand: w
      • AT1G25510.1 - [+] show detail - Eukaryotic aspartyl protease family protein
        Distance: -761; Region: promoter
      • AT1G25520.1 - [+] show detail - Uncharacterized protein family (UPF0016)
        Distance: -516; Region: promoter
    Flanking Genome Sequence: ET13480 - 5-prime edge 
    TCCTACTTTA TCCCTGCCTA AATCTAAACT ATAAATTCTA AAATACACTT 
    CTAATCTCAG CTTAACATGA TATGCAGTTG AGATAGATAG AATATTGCCA 
    CCTGATTTTA GTTATTCATC AATTTTAGAA TTAAATAAAT TAATATTAAT 
    ATAAGTACAG TTGGATCAAA TCAAATATAA TTACATACGT TTGCGAATCA 
    ATTCGCCACC AATCAGAAAT CGGTCAATTT TTTTTTATTT GTATAAAATA 
    GTAGGATAAA ACGAAATAAA ATTTAGTTCA GATAAGCGAA AAATACTAAA 
    ATACCCAATC AGTTTTGAGC ATCTCTCAAA AACTTACGTG TTATACTATT 
    CTAAACGTTA CGTCTCAATC GTGATCGCGA CAAGTTAGTT ATCAAAGAAG 
    TAAAAGTCTT TATTGTTTTG CTCGAGCAAG TGACGCAAGT CGCAAACAAC 
    AACACAAGGG AACAAATTAA CATCTTCTAA ACTCAAGTTG GGTTTTCTGG 
    GTCCCACACA TTAAAATCGT TGGTTGTTAT CAATCCACGT GGTAAGATCT 
    TAAGGGTTAA AGAATCAGAA TCAAATTCAC CTACAATCCC CAAAAAAAAA 
    GGATTCATCT TTTAGCTCTT CAGCGAATGT TCGTCTCG

AT1G25510.1

Model type
Protein coding
Short Description
Eukaryotic aspartyl protease family protein
Computational Description
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G18490.1); Has 4139 Blast hits to 4120 proteins in 342 species: Archae - 0; Bacteria - 0; Metazoa - 1183; Fungi - 740; Plants - 2035; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25520.1

Model type
Protein coding
Short Description
Uncharacterized protein family (UPF0016)
Computational Description
Uncharacterized protein family (UPF0016); INVOLVED IN: response to karrikin; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: Uncharacterized protein family (UPF0016) (TAIR:AT1G68650.1); Has 1806 Blast hits to 1733 proteins in 669 species: Archae - 27; Bacteria - 1021; Metazoa - 159; Fungi - 140; Plants - 210; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink).
Link
InterPro Scan - TAIR