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ET13486

CSHL Arabidopsis genetrap mutant lines

Original: ET13486

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13486

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22548228 [Map]; Strand: c
      • AT5G55680.1 - [+] show detail - glycine-rich protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13486 - 3-prime edge 
    AACGGTAGAG GATTTTACCG ACCGTTACCG ACCGTTTTCA TCCTTGAGTC 
    CCACCACCTC AATAGAATCG CCTGCCACCA CCCCATCAAA CCAACCACCA 
    GTCTCCGCCG ATGCTCCATA TATAACAGCA ACATCGCCAG TAACAACCCC 
    TGATATTCCA TCAACTCCAG CGAATACGCC GGACATATTT CCTTACGGAC 
    GAGGTCCGGT GAGTAGTTCT GCACCAGCGA CGGCGAATCT GGCTCCAGAG 
    ACTGCTGAGG TTCCCGCCGG AGCCAAGTCG GCTTCTAAAT TCGTTCAACA 
    TGATCTCCTA TGCATATTTT TGATCTTAGT AGCCACTTTG GTTCTTCCAG 
    CTAACTAGCT TTTTGTCAGA CTATAAGAAG ACTCTTCAGT ATATCTTGTA 
    ATTCTAATGA ACAAGATACT TACTTGTTTT GTATTGATTA CTTTATAGTA 
    TATTAATGTT GGTAGATTAT ATTTGTTAGT ACAATATGTT TTCGTAAAAA 
    CACCATTTTC TTATTCCATG ATATAGCTAT GAAAAAAATC AACAAACTTA 
    ATAGAAACTT GATAAAAAGA AGTTTATAAA GCAACATTCA AACGGAAGAA 
    ACAAATGACA TTTCTCACAT AGAAAGTTTA CTTGAATCCT CCAAATAATT 
    AACTTGTGCA AACCTGAAGG GATAATCTTG GAACTGCTTC ACATTGTTGA 
    ACATACTGTT TCCTAAACCC CAATGTATGG GCTCCATATA AGCTGTCCTC 
    TGTACATCGG ACCATATGGA CCCATCCGAA CACTCCCGTA AACAAGCTTT 
    GCCCGTTCGC TATCATCG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22547269 [Map]; Strand: c
      • AT5G55670.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -468; Region: promoter
      • AT5G55670.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -468; Region: promoter
    Flanking Genome Sequence: ET13486 - 5-prime edge 
    TTGTCGGAAG TGAAGTAGCC GTTAACCGGC TAAAACCGGT TATTATGAGA 
    CGACAGGAAG TTTTATTCAG AAATGATCAG ACGACGAGTC GTTTAATAAG 
    TTTTCGAAAG TTTGAACGAC AGGTAGTTCA CATAAGTGAG CCCGTTAAAA 
    GCAAGCCCAT TTGTTCTGGG TCATGAAACC ACGCGTATTG GATTGTTGTT 
    AATTCTCGTA AATTCGGAAA ACACGTGTCA TCTCTACACT AGAAAAAGGC 
    TCTACAATGC GCGACTGTGT ACGGTGCATG TTAGTGAAAT TAGTTGGATT 
    CCATCGAGGA AAAAAATAAT TTTAATTGTA AAGAAATCAA AAAAGAAAAT 
    CCAAGAAATT TCACAAATCT ACCGGATTAG GGTTTCTAGC AACAGGTCCT 
    GTCTCCGGTG ACAAAATTTC TGCAAAATCT CTTCTTTTAT TGAGATTGT

AT5G55670.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G13190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G55670.2

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G13190.1).
Link
InterPro Scan - TAIR

AT5G55680.1

Model type
Protein coding
Short Description
glycine-rich protein
Computational Description
glycine-rich protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR