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ET13487

CSHL Arabidopsis genetrap mutant lines

Original: ET13487

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13487

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 17711199 [Map]; Strand: w
      • AT5G44010.1 - [+] show detail - unknown protein; Has 28 Blast hits to 26 proteins in 11 species: Archae - 0; ...
        Distance: -2000; Region: intergenic
      • AT5G44020.1 - [+] show detail - HAD superfamily, subfamily IIIB acid phosphatase
        Distance: -1210; Region: intergenic
    Flanking Genome Sequence: ET13487 - 3-prime edge 
    CGGTAGAGGA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAATAAAG 
    AGGGTTTAGA GGTCGCGATG AATGACTGCT CTCTCTTGGC TATTTTGGTT 
    GGTCATACTT CGTTTCAGCT AAAACGTGTT CAACTGTAGA TTTTTCGATC 
    GGATACGTTA CAGGAAAATA AGTACATTTT AGTGATATAA ATAAGCAAAT 
    CAATTATATT ATGTGTTTCC ACATAAATCA TCATTTTTTC TTAGAAATCA 
    AAATCTTACA GATTGCATAC ACCTTCGGAC TAGTCAGCTT TCTCTACGCC 
    TTTAAATATA TTTTTCTTCT CTAAAACACA ATTTTCAGCT TTTGATA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 75548 [Map]; Strand: w
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -159; Region: promoter
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -170; Region: promoter
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET13487 - 5-prime edge 
    TCCTACTTTC TCCCTGGGTC CACCAAAGTC AGCAGCAGCT AGAACAAGAG 
    CGACTCTGCA GCTGCTCTTC TCCCGCTTCC TTCCTGTTAG TTAGCCTCAG 
    AGATCCTCGT TCCCCGATAA TGGATTTGGG AAAACTGATC CAGCTGTCTG 
    CGCTGCTGTG CCCATTTCTT CTATCATTAC ACTTTAGAAT CGCTGGGGCC 
    TCCGCCCACA TCTACTCTTC CCAGCCCTTC CACGATGTCG GTAATTCTCT 
    CCTCCTCTAC GGTGGCAGCG AGGGCATCTT CGCCTCTTCC CGATCTTTAA 
    TCAGGTATAT TCTATGGATT ACATTTTCAA CTCTTTTGAT GCTCTCTACT 
    CTACTCTACT CATCCTCCCT CCTCACTGCA GGTTTGAGAA CATCACTCTC 
    TGGAGGACAA TTACCGGTAA GGGCCACCGC AGCAATGGGT TAGTTCAAGC 
    AGTGATCTTT GAAGCCTCCG ATCGTAACAA TATCGGTGGT TCAGCTTACG 
    GAGGCCAAAG ATCTATTTGC TGCACTCCAG ATCTGGCCAA GCTTCAAGGC 
    TGTAAGCAGG GTGAGATCAT TAGGATTCCT TCTCCACATG ACCCTCAATG 
    GCCTATCCTC TTACCTGTCC GCTTTTAAGG AAAACGCTCG TCTGCTAAGA 
    TGGCAGACAC TGAGATTCTT ATCACCAAGA CTGGAATCTA TAATCTCTTA

AT2G01060.1

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01060.2

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT3G13040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.1

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.2

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G44010.1

Model type
Protein coding
Computational Description
unknown protein; Has 28 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G44020.1

Model type
Protein coding
Short Description
HAD superfamily, subfamily IIIB acid phosphatase
Computational Description
HAD superfamily, subfamily IIIB acid phosphatase ; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT1G04040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR