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ET13491

CSHL Arabidopsis genetrap mutant lines

Original: ET13491

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13491

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 7950143 [Map]; Strand: c
      • AT3G22421.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G22425.1 - [+] show detail - imidazoleglycerol-phosphate dehydratase
        Distance: -912; Region: promoter
      • AT3G22425.2 - [+] show detail - imidazoleglycerol-phosphate dehydratase
        Distance: -912; Region: promoter
    Flanking Genome Sequence: ET13491 - 5-prime edge 
    GATGGATAAA AACCTGTTTG CAATGAGCAT CTTCTTCAAT GGAATTGACA 
    TTGATCCATC TGCAGAGCAA AGAGATAAAC TTACTTGCCT ATACGACGAT 
    TCAGAACAAG TCAAGATATC TCAAGTCTTT CACTGCGAGG GTTTGTTACT 
    ATGCGTCTTG GAAGACGATA AGTGTAGTCT TGTTGTTTGG AATCCGTATT 
    GGGGACAAAC AAGGTGGATC GAACCCAGAT ATTTTTCCCG GATACAGGAT 
    TGTTATGGCA GGTACATGTA CGTGTACGCT CTTGGATACA ATAATAAGAG 
    TCGTAGTCAC AAAATCTTGA GGTTTATAGA TGGTGCATTC GATTTCCCTT 
    TTTGGTATGA AATCTACGAT TTTGACTCTG ATTTGTGGAC GACTCTTGAC 
    GTTACTCCAC AATGGTTTAT AAATTTCCCT CCCCGTGGTT GTTATAACCG 
    TGGTGTTACT CTCAAGGGAA ACCC

AT3G22421.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT3G22940.1); Has 1311 Blast hits to 1241 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1311; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G22425.1

Model type
Protein coding
Short Description
imidazoleglycerol-phosphate dehydratase
Curator Summary
Encodes imidazoleglycerolphosphate dehydratase.
Computational Description
imidazoleglycerol-phosphate dehydratase (IGPD); FUNCTIONS IN: imidazoleglycerol-phosphate dehydratase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Imidazoleglycerol-phosphate dehydratase, conserved site (InterPro:IPR020565), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Imidazoleglycerol-phosphate dehydratase (InterPro:IPR000807); BEST Arabidopsis thaliana protein match is: HISTIDINE BIOSYNTHESIS 5B (TAIR:AT4G14910.1); Has 6614 Blast hits to 6614 proteins in 2210 species: Archae - 198; Bacteria - 4100; Metazoa - 4; Fungi - 195; Plants - 86; Viruses - 0; Other Eukaryotes - 2031 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G22425.2

Model type
Protein coding
Short Description
imidazoleglycerol-phosphate dehydratase
Curator Summary
Encodes imidazoleglycerolphosphate dehydratase.
Computational Description
imidazoleglycerol-phosphate dehydratase (IGPD); FUNCTIONS IN: imidazoleglycerol-phosphate dehydratase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Imidazoleglycerol-phosphate dehydratase, conserved site (InterPro:IPR020565), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Imidazoleglycerol-phosphate dehydratase (InterPro:IPR000807); BEST Arabidopsis thaliana protein match is: HISTIDINE BIOSYNTHESIS 5B (TAIR:AT4G14910.1); Has 6872 Blast hits to 6870 proteins in 2212 species: Archae - 198; Bacteria - 4110; Metazoa - 4; Fungi - 197; Plants - 87; Viruses - 0; Other Eukaryotes - 2276 (source: NCBI BLink).
Link
InterPro Scan - TAIR