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ET13498

CSHL Arabidopsis genetrap mutant lines

Original: ET13498

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13498

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12080258 [Map]; Strand: c
      • AT4G23050.1 - [+] show detail - PAS domain-containing protein tyrosine kinase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G23050.2 - [+] show detail - PAS domain-containing protein tyrosine kinase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13498 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTACCGGTAA GGAATCCGCG 
    ACGGGATTGG AGACGGAGGC GGAGAAAGAG GCGGAGGTAG AGGTGGAAGC 
    GGAGGCGGCG GATTCCTGGG ATAATCCGAC GGCGACTTGG GAGAGAGCTG 
    TTTCTGGATT CTATTTCGCT GATAGTGCGT ATCGGACTTT GATGGATTCA 
    ATGGGACACG CGATTCATGT AACATCAGCT GCGTCTGGAG AAATTACATT 
    CTGGTGAGCT TGATAAGTTC TTCTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12080175 [Map]; Strand: c
      • AT4G23050.1 - [+] show detail - PAS domain-containing protein tyrosine kinase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G23050.2 - [+] show detail - PAS domain-containing protein tyrosine kinase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13498 - 5-prime edge 
    CTTACCGGTT CGACTCTCCT CCCTGAGCAT AAGTCATCGA CATCCTCTCT 
    TCATCTCGCT CGACTCGTCT CCATTCTCTG ACACCACTCC ACCAAAACCT 
    GGTAGAGACT CGATTCCGAG TTGTTTCCGG CCATCGTAAT CGCCGGTGAC 
    TCTGTTTGAG CAGTCGCATC AAGATCCGAC TCTGATGAAA ATTCACAAAT 
    TAAAAATATA ATTTAAAACG TTGGCATTCC CTCATTGTTT ATTATTTTTC 
    AGCTGCTT

AT4G23050.1

Model type
Protein coding
Short Description
PAS domain-containing protein tyrosine kinase family protein
Computational Description
PAS domain-containing protein tyrosine kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity, signal transducer activity; INVOLVED IN: signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: PAS domain-containing protein tyrosine kinase family protein (TAIR:AT3G06640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G23050.2

Model type
Protein coding
Short Description
PAS domain-containing protein tyrosine kinase family protein
Computational Description
PAS domain-containing protein tyrosine kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity, signal transducer activity; INVOLVED IN: signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: PAS domain-containing protein tyrosine kinase family protein (TAIR:AT5G49470.3); Has 125163 Blast hits to 123569 proteins in 4990 species: Archae - 182; Bacteria - 13357; Metazoa - 47772; Fungi - 11074; Plants - 33184; Viruses - 511; Other Eukaryotes - 19083 (source: NCBI BLink).
Link
InterPro Scan - TAIR