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ET13499

CSHL Arabidopsis genetrap mutant lines

Original: ET13499

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13499

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 14124401 [Map]; Strand: c
      • AT5G35970.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -1061; Region: intergenic
      • AT5G35980.1 - [+] show detail - yeast YAK1-related gene 1
        Distance: -3583; Region: intergenic
    Flanking Genome Sequence: ET13499 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    ATTTCCGGTG AAAGTTGGAT TTCAGATAAT AAATTCACTT CGTGCGAAGA 
    GGTATGTTTA AATTTAATTT AATTGGTAAA ACAAAAACAA CTGAATCATG 
    TTTGAGTTAT AATCTTACAA TCGTTACTTA ATAGAAAGTA GTTGTTTACT 
    GAAAAGCTTG TCTTCGTTTT AGTACTACAA ATTAAATATA GGGGTGTGTG 
    TAACCCACGG AATATTATTA TAGTTTTTGA AAAACTGTTT TCCAAAGATT 
    ATTGGTCCTC CTACGTAGAA TAATGGGTGA AGCAACATGT GGCAGAGAAG 
    ATCACTTGAG AAAGACAACT AAGCGTCTCC CGAAGAAAAG ATCCTACTT

AT5G35970.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, DNA binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 6377 Blast hits to 5712 proteins in 1082 species: Archae - 188; Bacteria - 2376; Metazoa - 1211; Fungi - 1055; Plants - 600; Viruses - 0; Other Eukaryotes - 947 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G35980.1

Model type
Protein coding
Short Description
yeast YAK1-related gene 1
Computational Description
yeast YAK1-related gene 1 (YAK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G17750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR