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ET13500

CSHL Arabidopsis genetrap mutant lines

Original: ET13500

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13500

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23285309 [Map]; Strand: c
      • AT5G57490.1 - [+] show detail - voltage dependent anion channel 4
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET13500 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGCCAATA 
    TCGGCAAACG GAGCTGGACT GCTTCCCATC TTCGGATATA GAAAACAAAT 
    GCCTACAAAG TAAAGCAAAT ACACACTAAT ATCAAAAACA AATCACGACT 
    ATTCAGAAAT GCTCTGCATT AATCTACCAA TCAGATGCTT GAAGTTGTAT 
    TGATATCAAT CCAAAGCTTC AATTGCTTAT AGCTACAGTT CTCTAATTCC 
    AAACCAAAAC TATGTCAATC TATCTATAGA ATCGAAGCAA ACACAAATGG 
    CGAGAAACAG ATCGAATCGA TCGAAAAAGC CAAATCTCCA GACTAATTCA 
    AAAACTAGTC CACATGAATC ACAATATCCC ATCTCAGCTC CGAGAAGAAG 
    AACCAAGAAC TAACGACAAA AAGAGAGGAA GATTCCTTAC GAAAATGGAA 
    GATCGACGAA TACAACGGAA CCGATAACAA TCAAACGGAG CTTCGTCGGA 
    CAAAACCTAA GATACTGCTT CCGTCGCCTT CGATAATGGA ATCCGGCGAC 
    GGCGGCTGAA GACAGTAAAC ACTACTATTT AGCAGTAAAA TTAAGAAAAG 
    AGCCTCGAGA AACTCAAAGG TGAAGGAGAA GAGAGACCAA CGCTCTCGAT 
    GAGAGTAATG ATAAT

AT5G57490.1

Model type
Protein coding
Short Description
voltage dependent anion channel 4
Curator Summary
Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.
Computational Description
voltage dependent anion channel 4 (VDAC4); FUNCTIONS IN: voltage-gated anion channel activity; INVOLVED IN: response to bacterium, anion transport; LOCATED IN: mitochondrial outer membrane, mitochondrion, plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: voltage dependent anion channel 2 (TAIR:AT5G67500.1); Has 864 Blast hits to 864 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 407; Fungi - 143; Plants - 294; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Link
InterPro Scan - TAIR