1. Home
  2. Mutant Lines
  3. ET13503

ET13503

CSHL Arabidopsis genetrap mutant lines

Original: ET13503

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13503

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27224470 [Map]; Strand: w
      • AT1G72300.1 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: -3347; Region: intergenic
      • AT1G72310.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -1427; Region: intergenic
    Flanking Genome Sequence: ET13503 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    AGTTTTGAGA AGTCTGATAA CAGAAGAATA GGAAAAGAGA AGAGGAAACG 
    GGTTAGGGCT GGGCCGTATC AACTTATGGC CCAAATGAGT TCTAATGCGA 
    TAAAACGGGT CGGGTCTCAA ACTGACCCGT TTATGTTTTC GGGGGTCAAT 
    TTGCACTCAA AAGGGTCGGA CCGGGTTTGT CTCTCATTTT TGGCTCTTTC 
    GAGAGTAACA CTATATATGG CTAATTTTTG CTTTGACTTT ACTCAAACAT 
    CTCATGATTT GTTTTGGGTA TACCAACAAC TAGTTGCCAA GTATACCAAA 
    AAAATGAAAG TATATTGAAT CTTGCATACA GAATCTTTAT TAAAAACAAT 
    TTTGATTACA TATACTTTGA ATGGGTTTAT TGTTTAGGTG AGATTTTTGT 
    GCTAGGTTTT GTCGGGAGAT CGAAAGGATT TTAATTCTCA AGTCTATTAA 
    TGCAGTACTA CTAATTTGAA AACCGAAATA TGAGTTAGTT TTTTTTTGTT 
    TTTTGTTGCA TAAAACTAGT AAAAGTTTAA AAATATAAAG ACAATTTGCT 
    TGCTTCCCTA GTTTTAATGA TTATTGTTAA AAACTTGATT GAATGATCAA 
    ATGGGTTATT GGGATACAAA GACCAAA

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET13503 - 5-prime edge 
    CTCCCCCCCC CCCCCCCCCT TTCCTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17861695 [Map]; Strand: c
      • AT4G38010.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
        Distance: -434; Region: promoter
      • AT4G38020.1 - [+] show detail - tRNA/rRNA methyltransferase (SpoU) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13503 - 5-prime edge 
    CGTTTTCTTC CCTAGTCCAA ACTCTATTCA CCGGAGATTT ATCTGAACCG 
    TAGATAGACA GATCATCTGA AGGGTTTATC TGAATCTGGG TTCTCGGTAA 
    TTGGGCTGAC CAAGCTCGAA GCTTTGACGC ATAGGTTTTA ATTTCTCAAT 
    GGGAGAAGTG ATGACACAGG TTGTGAAGCG AATACTCATC CGCAATGCAT 
    TGCACTTCTG CAACTAATCC GATTGATTTC TCTTCTTTCT CCGGTGAAGC 
    CTAGAGTCTA GAGAGGTCTA ACAATTTTAT AGAAAAGCCC AATCTGTTAA 
    AAAAATAGGC CCAATAATAG GCCCAATAAG TGGGTTTAAC GGTAAACCCT 
    CT

AT1G72300.1

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Curator Summary
Encodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of PSY1. PSY1 is an 18-aa tyrosine-sulfated glycopeptide encoded by AT5G58650 that promotes cellular proliferation and expansion.
Computational Description
Leucine-rich receptor-like protein kinase family protein; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: receptor like protein 2 (TAIR:AT1G17240.1); Has 184889 Blast hits to 127916 proteins in 4307 species: Archae - 126; Bacteria - 18793; Metazoa - 54455; Fungi - 9661; Plants - 78637; Viruses - 498; Other Eukaryotes - 22719 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G72310.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Curator Summary
Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3).
Computational Description
ATL3; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G53820.1); Has 10122 Blast hits to 10073 proteins in 295 species: Archae - 0; Bacteria - 0; Metazoa - 2687; Fungi - 787; Plants - 5131; Viruses - 60; Other Eukaryotes - 1457 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38010.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR-like) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: SLOW GROWTH 1 (TAIR:AT2G22410.1); Has 36420 Blast hits to 13424 proteins in 196 species: Archae - 0; Bacteria - 4; Metazoa - 28; Fungi - 56; Plants - 35898; Viruses - 0; Other Eukaryotes - 434 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38020.1

Model type
Protein coding
Short Description
tRNA/rRNA methyltransferase (SpoU) family protein
Computational Description
tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 12174 Blast hits to 12170 proteins in 2688 species: Archae - 7; Bacteria - 9680; Metazoa - 153; Fungi - 96; Plants - 106; Viruses - 0; Other Eukaryotes - 2132 (source: NCBI BLink).
Link
InterPro Scan - TAIR